Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 FOSL1P1-201ENST00000511041 816 ntBASIC18.17■□□□□ 0.5
RTL3Q8N8U3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 PRELID1P1-202ENST00000567272 903 ntBASIC18.17■□□□□ 0.5
RTL3Q8N8U3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 AL355312.1-201ENST00000407115 2176 ntBASIC18.17■□□□□ 0.5
RTL3Q8N8U3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AC090340.1-201ENST00000620778 4980 ntBASIC18.16■□□□□ 0.5
RTL3Q8N8U3 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 LINC01451-201ENST00000623792 534 ntBASIC18.16■□□□□ 0.5
RTL3Q8N8U3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RTL3Q8N8U3 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 KRT16P4-201ENST00000453883 522 ntBASIC18.15■□□□□ 0.5
RTL3Q8N8U3 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 AC012313.10-201ENST00000623509 926 ntBASIC18.15■□□□□ 0.5
RTL3Q8N8U3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.15■□□□□ 0.5
RTL3Q8N8U3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RTL3Q8N8U3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
RTL3Q8N8U3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
RTL3Q8N8U3 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RTL3Q8N8U3 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RTL3Q8N8U3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.14■□□□□ 0.5
RTL3Q8N8U3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
RTL3Q8N8U3 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.14■□□□□ 0.49
RTL3Q8N8U3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RTL3Q8N8U3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RTL3Q8N8U3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
RTL3Q8N8U3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RTL3Q8N8U3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms