Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RPS15P9-201ENST00000494093 319 ntBASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 IGHV3-65-201ENST00000523210 341 ntBASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 AC018845.2-201ENST00000568326 409 ntBASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 AC008667.4-201ENST00000607370 168 ntBASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 AC019129.2-201ENST00000609837 1235 ntBASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 AL596442.2-201ENST00000610240 980 ntBASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPAS3Q8IXF0 CROCCP3-202ENST00000420820 1947 ntBASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 HCG4B-203ENST00000450128 991 ntBASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 SIGLEC30P-201ENST00000455569 941 ntBASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPAS3Q8IXF0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.27■□□□□ 0.51
NPAS3Q8IXF0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NPAS3Q8IXF0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.27■□□□□ 0.51
NPAS3Q8IXF0 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NPAS3Q8IXF0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NPAS3Q8IXF0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 PRSS29P-201ENST00000440800 595 ntBASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 MIR4469-201ENST00000583919 79 ntBASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 AL096828.2-201ENST00000567259 1965 ntBASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPAS3Q8IXF0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 KRT18P28-201ENST00000453838 1332 ntBASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 AL513190.1-201ENST00000621254 727 ntBASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 AC004790.2-201ENST00000623588 572 ntBASIC18.25■□□□□ 0.51
NPAS3Q8IXF0 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms