Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.13■□□□□ 0.65
HERC6Q8IVU3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HERC6Q8IVU3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HERC6Q8IVU3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HERC6Q8IVU3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HERC6Q8IVU3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HERC6Q8IVU3 AC120498.9-201ENST00000339021 3867 ntBASIC19.12■□□□□ 0.65
HERC6Q8IVU3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 RPS15P9-201ENST00000494093 319 ntBASIC19.12■□□□□ 0.65
HERC6Q8IVU3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 AC004790.2-201ENST00000623588 572 ntBASIC19.12■□□□□ 0.65
HERC6Q8IVU3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HERC6Q8IVU3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 AL031432.2-201ENST00000566714 459 ntBASIC19.11■□□□□ 0.65
HERC6Q8IVU3 AL928711.1-201ENST00000570165 459 ntBASIC19.11■□□□□ 0.65
HERC6Q8IVU3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HERC6Q8IVU3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 SPCS2P1-201ENST00000561636 679 ntBASIC19.1■□□□□ 0.65
HERC6Q8IVU3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 AC093028.1-201ENST00000622998 982 ntBASIC19.1■□□□□ 0.65
HERC6Q8IVU3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HERC6Q8IVU3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms