Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 PP12613-201ENST00000424958 2230 ntBASIC17.32■□□□□ 0.36
VRK3Q8IV63 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 RCN1P2-201ENST00000398357 915 ntBASIC17.32■□□□□ 0.36
VRK3Q8IV63 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 AC009533.2-201ENST00000543664 586 ntBASIC17.32■□□□□ 0.36
VRK3Q8IV63 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 AC011467.2-201ENST00000598425 242 ntBASIC17.32■□□□□ 0.36
VRK3Q8IV63 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 AC133963.1-201ENST00000504166 1679 ntBASIC17.32■□□□□ 0.36
VRK3Q8IV63 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VRK3Q8IV63 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 AC138894.3-201ENST00000603787 634 ntBASIC17.31■□□□□ 0.36
VRK3Q8IV63 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.31■□□□□ 0.36
VRK3Q8IV63 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VRK3Q8IV63 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VRK3Q8IV63 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.3■□□□□ 0.36
VRK3Q8IV63 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VRK3Q8IV63 FOSL1P1-201ENST00000511041 816 ntBASIC17.3■□□□□ 0.36
VRK3Q8IV63 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.3■□□□□ 0.36
VRK3Q8IV63 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.3■□□□□ 0.36
VRK3Q8IV63 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 AC012313.10-201ENST00000623509 926 ntBASIC17.3■□□□□ 0.36
VRK3Q8IV63 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.3■□□□□ 0.36
VRK3Q8IV63 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VRK3Q8IV63 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VRK3Q8IV63 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VRK3Q8IV63 HLA-J-201ENST00000462773 1622 ntBASIC17.29■□□□□ 0.36
VRK3Q8IV63 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 FAM220CP-201ENST00000395253 831 ntBASIC17.29■□□□□ 0.36
VRK3Q8IV63 NUS1P2-201ENST00000417358 873 ntBASIC17.29■□□□□ 0.36
VRK3Q8IV63 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 MIR3652-201ENST00000579335 131 ntBASIC17.29■□□□□ 0.36
VRK3Q8IV63 AC019129.2-201ENST00000609837 1235 ntBASIC17.29■□□□□ 0.36
VRK3Q8IV63 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK3Q8IV63 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK3Q8IV63 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms