Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP54Q70EL1 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC23.39■■□□□ 1.34
USP54Q70EL1 FALEC-201ENST00000416894 566 ntTSL 3 BASIC23.39■■□□□ 1.34
USP54Q70EL1 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
USP54Q70EL1 AC023141.13-201ENST00000604991 943 ntBASIC23.39■■□□□ 1.34
USP54Q70EL1 AC006116.8-202ENST00000587620 1550 ntBASIC23.39■■□□□ 1.34
USP54Q70EL1 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC23.39■■□□□ 1.34
USP54Q70EL1 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
USP54Q70EL1 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP54Q70EL1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP54Q70EL1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP54Q70EL1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP54Q70EL1 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
USP54Q70EL1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC23.39■■□□□ 1.33
USP54Q70EL1 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
USP54Q70EL1 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
USP54Q70EL1 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP54Q70EL1 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP54Q70EL1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC23.38■■□□□ 1.33
USP54Q70EL1 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC23.38■■□□□ 1.33
USP54Q70EL1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
USP54Q70EL1 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC23.38■■□□□ 1.33
USP54Q70EL1 ACTG1P14-201ENST00000446382 1122 ntBASIC23.38■■□□□ 1.33
USP54Q70EL1 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC23.38■■□□□ 1.33
USP54Q70EL1 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC23.38■■□□□ 1.33
USP54Q70EL1 AC007064.4-201ENST00000637740 555 ntBASIC23.38■■□□□ 1.33
USP54Q70EL1 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.38■■□□□ 1.33
USP54Q70EL1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 AP000974.1-201ENST00000623909 2387 ntBASIC23.38■■□□□ 1.33
USP54Q70EL1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
USP54Q70EL1 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 AC092919.2-201ENST00000623631 1645 ntBASIC23.38■■□□□ 1.33
USP54Q70EL1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
USP54Q70EL1 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC23.38■■□□□ 1.33
USP54Q70EL1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP54Q70EL1 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
USP54Q70EL1 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC23.37■■□□□ 1.33
USP54Q70EL1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC23.37■■□□□ 1.33
USP54Q70EL1 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 AL139400.1-201ENST00000366220 510 ntBASIC23.37■■□□□ 1.33
USP54Q70EL1 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC23.37■■□□□ 1.33
USP54Q70EL1 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 CEND1P1-201ENST00000451006 455 ntBASIC23.37■■□□□ 1.33
USP54Q70EL1 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
USP54Q70EL1 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC23.37■■□□□ 1.33
USP54Q70EL1 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP54Q70EL1 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
USP54Q70EL1 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC23.37■■□□□ 1.33
USP54Q70EL1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
USP54Q70EL1 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC23.36■■□□□ 1.33
USP54Q70EL1 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP54Q70EL1 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC23.36■■□□□ 1.33
USP54Q70EL1 AC023141.5-201ENST00000458585 616 ntBASIC23.36■■□□□ 1.33
USP54Q70EL1 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC23.36■■□□□ 1.33
USP54Q70EL1 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP54Q70EL1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC23.36■■□□□ 1.33
USP54Q70EL1 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP54Q70EL1 KRT18P28-201ENST00000453838 1332 ntBASIC23.36■■□□□ 1.33
USP54Q70EL1 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
USP54Q70EL1 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
USP54Q70EL1 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP54Q70EL1 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP54Q70EL1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC23.36■■□□□ 1.33
USP54Q70EL1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC23.35■■□□□ 1.33
USP54Q70EL1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 SLC25A1P3-201ENST00000395415 828 ntBASIC23.35■■□□□ 1.33
USP54Q70EL1 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC23.35■■□□□ 1.33
USP54Q70EL1 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC23.35■■□□□ 1.33
USP54Q70EL1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 SPCS2P1-201ENST00000561636 679 ntBASIC23.35■■□□□ 1.33
USP54Q70EL1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
USP54Q70EL1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC23.35■■□□□ 1.33
USP54Q70EL1 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC23.35■■□□□ 1.33
USP54Q70EL1 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP54Q70EL1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms