Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE3Q6ZMZ3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE3Q6ZMZ3 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 AC012317.2-201ENST00000623305 2251 ntBASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 AC009949.1-201ENST00000623048 1830 ntBASIC20.88■□□□□ 0.93
SYNE3Q6ZMZ3 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 DDX43P3-201ENST00000441064 443 ntBASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 AP002414.4-201ENST00000589764 1148 ntBASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE3Q6ZMZ3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 AC006116.8-202ENST00000587620 1550 ntBASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 AC246785.2-201ENST00000432512 513 ntBASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 AC093458.2-201ENST00000623150 629 ntBASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SYNE3Q6ZMZ3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE3Q6ZMZ3 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE3Q6ZMZ3 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE3Q6ZMZ3 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE3Q6ZMZ3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.85■□□□□ 0.93
SYNE3Q6ZMZ3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms