Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
HDAC4P56524 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.53■□□□□ 0.56
HDAC4P56524 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 AC011840.4-201ENST00000578471 627 ntBASIC18.53■□□□□ 0.56
HDAC4P56524 AP005901.3-202ENST00000581653 237 ntBASIC18.53■□□□□ 0.56
HDAC4P56524 NPAP1P7-201ENST00000613027 823 ntBASIC18.53■□□□□ 0.56
HDAC4P56524 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HDAC4P56524 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HDAC4P56524 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.53■□□□□ 0.56
HDAC4P56524 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDAC4P56524 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HDAC4P56524 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.52■□□□□ 0.56
HDAC4P56524 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HDAC4P56524 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.52■□□□□ 0.56
HDAC4P56524 KRT18P1-202ENST00000452408 1331 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
HDAC4P56524 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
HDAC4P56524 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.52■□□□□ 0.56
HDAC4P56524 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.52■□□□□ 0.56
HDAC4P56524 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
HDAC4P56524 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.52■□□□□ 0.56
HDAC4P56524 AC246785.2-201ENST00000432512 513 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.52■□□□□ 0.56
HDAC4P56524 TPSP2-201ENST00000561760 610 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.52■□□□□ 0.56
HDAC4P56524 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 MIR3180-1-201ENST00000580374 94 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.52■□□□□ 0.56
HDAC4P56524 MIR3180-3-201ENST00000584616 94 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 AP002414.4-201ENST00000589764 1148 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 AC069148.1-201ENST00000608741 768 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.52■□□□□ 0.56
HDAC4P56524 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.52■□□□□ 0.56
HDAC4P56524 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDAC4P56524 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.52■□□□□ 0.55
HDAC4P56524 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 LINC00304-203ENST00000565008 1864 ntBASIC18.52■□□□□ 0.55
HDAC4P56524 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDAC4P56524 AC097374.2-201ENST00000618617 1306 ntBASIC18.51■□□□□ 0.55
HDAC4P56524 AC010460.3-201ENST00000511359 1579 ntBASIC18.51■□□□□ 0.55
HDAC4P56524 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HDAC4P56524 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 AC125634.1-201ENST00000438758 1403 ntBASIC18.51■□□□□ 0.55
HDAC4P56524 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.51■□□□□ 0.55
HDAC4P56524 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 DRAXINP1-201ENST00000437611 948 ntBASIC18.51■□□□□ 0.55
HDAC4P56524 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.51■□□□□ 0.55
HDAC4P56524 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.51■□□□□ 0.55
HDAC4P56524 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.51■□□□□ 0.55
HDAC4P56524 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.51■□□□□ 0.55
HDAC4P56524 AL138831.2-201ENST00000606564 490 ntBASIC18.51■□□□□ 0.55
HDAC4P56524 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.51■□□□□ 0.55
HDAC4P56524 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDAC4P56524 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HDAC4P56524 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms