Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.86□□□□□ -0.03
ABCA1O95477 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.86□□□□□ -0.03
ABCA1O95477 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.86□□□□□ -0.03
ABCA1O95477 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
ABCA1O95477 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.86□□□□□ -0.03
ABCA1O95477 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
ABCA1O95477 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.86□□□□□ -0.03
ABCA1O95477 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.86□□□□□ -0.03
ABCA1O95477 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.86□□□□□ -0.03
ABCA1O95477 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
ABCA1O95477 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.86□□□□□ -0.03
ABCA1O95477 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.86□□□□□ -0.03
ABCA1O95477 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.86□□□□□ -0.03
ABCA1O95477 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.86□□□□□ -0.03
ABCA1O95477 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC14.86□□□□□ -0.03
ABCA1O95477 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 AC068587.9-201ENST00000641814 219 ntBASIC14.86□□□□□ -0.03
ABCA1O95477 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
ABCA1O95477 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ABCA1O95477 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.85□□□□□ -0.03
ABCA1O95477 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
ABCA1O95477 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC14.85□□□□□ -0.03
ABCA1O95477 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.85□□□□□ -0.03
ABCA1O95477 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
ABCA1O95477 RPS2P28-201ENST00000314255 741 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
ABCA1O95477 UNC93B6-202ENST00000528242 690 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.85□□□□□ -0.03
ABCA1O95477 MIR3687-2-201ENST00000577708 61 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 NKAPP1-205ENST00000585790 367 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 MIR3687-1-201ENST00000614492 61 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.85□□□□□ -0.03
ABCA1O95477 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 WIZP1-201ENST00000531444 2299 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
ABCA1O95477 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
ABCA1O95477 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.85□□□□□ -0.03
ABCA1O95477 AC105339.3-201ENST00000560043 636 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 AC040169.1-201ENST00000565382 521 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 AC011467.2-201ENST00000598425 242 ntBASIC14.85□□□□□ -0.03
ABCA1O95477 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.85□□□□□ -0.03
ABCA1O95477 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC14.85□□□□□ -0.03
ABCA1O95477 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ABCA1O95477 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA1O95477 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA1O95477 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 AC009113.1-201ENST00000570267 2443 ntBASIC14.84□□□□□ -0.03
ABCA1O95477 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA1O95477 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA1O95477 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA1O95477 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.84□□□□□ -0.03
ABCA1O95477 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
ABCA1O95477 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA1O95477 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA1O95477 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA1O95477 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC14.84□□□□□ -0.03
ABCA1O95477 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.84□□□□□ -0.03
ABCA1O95477 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ABCA1O95477 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms