Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CACNA1FO60840 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC22.19■■□□□ 1.14
CACNA1FO60840 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC22.19■■□□□ 1.14
CACNA1FO60840 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC22.19■■□□□ 1.14
CACNA1FO60840 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC22.19■■□□□ 1.14
CACNA1FO60840 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC22.19■■□□□ 1.14
CACNA1FO60840 AL139327.4-201ENST00000612362 153 ntBASIC22.19■■□□□ 1.14
CACNA1FO60840 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC22.19■■□□□ 1.14
CACNA1FO60840 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 PXK-206ENST00000463280 2825 ntTSL 2 BASIC22.18■■□□□ 1.14
CACNA1FO60840 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC22.18■■□□□ 1.14
CACNA1FO60840 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC22.18■■□□□ 1.14
CACNA1FO60840 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC22.18■■□□□ 1.14
CACNA1FO60840 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
CACNA1FO60840 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 MIR1199-201ENST00000621445 119 ntBASIC22.18■■□□□ 1.14
CACNA1FO60840 AL805961.1-202ENST00000641562 540 ntBASIC22.18■■□□□ 1.14
CACNA1FO60840 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC22.18■■□□□ 1.14
CACNA1FO60840 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC22.18■■□□□ 1.14
CACNA1FO60840 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC22.18■■□□□ 1.14
CACNA1FO60840 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CACNA1FO60840 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CACNA1FO60840 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 AL135999.2-201ENST00000622438 1686 ntBASIC22.18■■□□□ 1.14
CACNA1FO60840 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.18■■□□□ 1.14
CACNA1FO60840 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC22.18■■□□□ 1.14
CACNA1FO60840 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CACNA1FO60840 AC136632.2-201ENST00000512891 861 ntBASIC22.18■■□□□ 1.14
CACNA1FO60840 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC22.18■■□□□ 1.14
CACNA1FO60840 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC22.18■■□□□ 1.14
CACNA1FO60840 CYB561-217ENST00000582997 877 ntTSL 5 BASIC22.18■■□□□ 1.14
CACNA1FO60840 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC22.18■■□□□ 1.14
CACNA1FO60840 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1FO60840 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CACNA1FO60840 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC22.17■■□□□ 1.14
CACNA1FO60840 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1FO60840 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1FO60840 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1FO60840 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1FO60840 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC22.17■■□□□ 1.14
CACNA1FO60840 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CACNA1FO60840 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC22.17■■□□□ 1.14
CACNA1FO60840 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1FO60840 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC22.17■■□□□ 1.14
CACNA1FO60840 PRKN-208ENST00000610470 531 ntTSL 2 BASIC22.17■■□□□ 1.14
CACNA1FO60840 PRKN-209ENST00000612485 225 ntTSL 5 BASIC22.17■■□□□ 1.14
CACNA1FO60840 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC22.17■■□□□ 1.14
CACNA1FO60840 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CACNA1FO60840 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
CACNA1FO60840 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
CACNA1FO60840 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC22.16■■□□□ 1.14
CACNA1FO60840 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC22.16■■□□□ 1.14
CACNA1FO60840 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC22.16■■□□□ 1.14
CACNA1FO60840 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC22.16■■□□□ 1.14
CACNA1FO60840 AP002414.1-201ENST00000391405 1147 ntBASIC22.16■■□□□ 1.14
CACNA1FO60840 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC22.16■■□□□ 1.14
CACNA1FO60840 AC098831.1-202ENST00000438821 336 ntBASIC22.16■■□□□ 1.14
CACNA1FO60840 AC087163.2-201ENST00000457299 853 ntBASIC22.16■■□□□ 1.14
CACNA1FO60840 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC22.16■■□□□ 1.14
CACNA1FO60840 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.16■■□□□ 1.14
CACNA1FO60840 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.16■■□□□ 1.14
CACNA1FO60840 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
CACNA1FO60840 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 BX640515.1-201ENST00000617215 977 ntBASIC22.16■■□□□ 1.14
CACNA1FO60840 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CACNA1FO60840 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1FO60840 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC22.15■■□□□ 1.14
CACNA1FO60840 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CACNA1FO60840 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1FO60840 TEX30-205ENST00000376029 959 ntTSL 2 BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms