Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.88■□□□□ 0.77
MSH4O15457 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
MSH4O15457 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.88■□□□□ 0.77
MSH4O15457 AC073592.5-201ENST00000624854 528 ntBASIC19.88■□□□□ 0.77
MSH4O15457 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
MSH4O15457 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
MSH4O15457 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH4O15457 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
MSH4O15457 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH4O15457 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
MSH4O15457 AC009078.2-202ENST00000463353 338 ntBASIC19.87■□□□□ 0.77
MSH4O15457 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.87■□□□□ 0.77
MSH4O15457 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.87■□□□□ 0.77
MSH4O15457 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
MSH4O15457 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.87■□□□□ 0.77
MSH4O15457 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 AL133373.2-201ENST00000623187 2828 ntBASIC19.87■□□□□ 0.77
MSH4O15457 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSH4O15457 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.86■□□□□ 0.77
MSH4O15457 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
MSH4O15457 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 LINC00304-203ENST00000565008 1864 ntBASIC19.86■□□□□ 0.77
MSH4O15457 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.86■□□□□ 0.77
MSH4O15457 AC026396.1-201ENST00000419388 421 ntBASIC19.86■□□□□ 0.77
MSH4O15457 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.86■□□□□ 0.77
MSH4O15457 AC002558.1-201ENST00000488906 803 ntBASIC19.86■□□□□ 0.77
MSH4O15457 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 SART3-203ENST00000546611 1184 ntBASIC19.86■□□□□ 0.77
MSH4O15457 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.86■□□□□ 0.77
MSH4O15457 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.86■□□□□ 0.77
MSH4O15457 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.86■□□□□ 0.77
MSH4O15457 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH4O15457 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
MSH4O15457 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.86■□□□□ 0.77
MSH4O15457 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 AC068880.1-201ENST00000507289 2297 ntBASIC19.86■□□□□ 0.77
MSH4O15457 AC134043.2-201ENST00000624206 2238 ntBASIC19.86■□□□□ 0.77
MSH4O15457 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.86■□□□□ 0.77
MSH4O15457 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.86■□□□□ 0.77
MSH4O15457 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSH4O15457 AL355312.1-201ENST00000407115 2176 ntBASIC19.85■□□□□ 0.77
MSH4O15457 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH4O15457 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH4O15457 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH4O15457 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH4O15457 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH4O15457 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSH4O15457 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.85■□□□□ 0.77
MSH4O15457 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH4O15457 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
MSH4O15457 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.85■□□□□ 0.77
MSH4O15457 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.85■□□□□ 0.77
MSH4O15457 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.85■□□□□ 0.77
MSH4O15457 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH4O15457 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH4O15457 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.85■□□□□ 0.77
MSH4O15457 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.85■□□□□ 0.77
MSH4O15457 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSH4O15457 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
MSH4O15457 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH4O15457 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH4O15457 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.85■□□□□ 0.77
MSH4O15457 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 AC079776.2-201ENST00000641154 1609 ntBASIC19.84■□□□□ 0.77
MSH4O15457 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms