Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
SMKR1H3BMG3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC13□□□□□ -0.33
SMKR1H3BMG3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC13□□□□□ -0.33
SMKR1H3BMG3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC13□□□□□ -0.33
SMKR1H3BMG3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC13□□□□□ -0.33
SMKR1H3BMG3 AC011298.2-201ENST00000617989 482 ntBASIC13□□□□□ -0.33
SMKR1H3BMG3 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC13□□□□□ -0.33
SMKR1H3BMG3 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
SMKR1H3BMG3 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 AL391005.1-201ENST00000623953 2435 ntBASIC13□□□□□ -0.33
SMKR1H3BMG3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13□□□□□ -0.33
SMKR1H3BMG3 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PCDHA1-201ENST00000378133 2726 ntBASIC12.99□□□□□ -0.33
SMKR1H3BMG3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 WT1-209ENST00000530998 2421 ntTSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 AC008040.2-201ENST00000461049 708 ntBASIC12.99□□□□□ -0.33
SMKR1H3BMG3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 IKBKGP1-201ENST00000612193 1073 ntBASIC12.99□□□□□ -0.33
SMKR1H3BMG3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 HLA-J-201ENST00000462773 1622 ntBASIC12.99□□□□□ -0.33
SMKR1H3BMG3 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.99□□□□□ -0.33
SMKR1H3BMG3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms