Protein–RNA interactions for Protein: Q9BYE3

LCE3D, Late cornified envelope protein 3D, humanhuman

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LCE3DQ9BYE3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PCDH8P1-201ENST00000428983 2773 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SSR1P1-201ENST00000407630 814 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SERPINH1P1-201ENST00000419794 1249 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC007322.1-201ENST00000426983 750 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KRT18P41-201ENST00000518924 1277 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC137761.2-201ENST00000561729 223 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC145350.3-201ENST00000569033 163 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 NTF6G-201ENST00000591094 616 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AL121829.2-201ENST00000620908 328 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC231657.2-201ENST00000624556 255 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC092437.1-201ENST00000624794 1048 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC068418.2-201ENST00000577309 3703 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 AC133963.1-201ENST00000504166 1679 ntBASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LCE3DQ9BYE3 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms