Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 HSDL1-208ENST00000619773 3059 nt8.36□□□□□ -1.071e-7■■□□□ 12.8
UPF1Q92900 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.498e-9■■□□□ 12.8
UPF1Q92900 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.48e-9■■□□□ 12.8
UPF1Q92900 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC21.61■■□□□ 1.058e-9■■□□□ 12.8
UPF1Q92900 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.65■□□□□ 0.268e-9■■□□□ 12.8
UPF1Q92900 B2M-206ENST00000559720 1220 ntTSL 514.43□□□□□ -0.12e-14■■□□□ 12.8
UPF1Q92900 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.172e-7■■□□□ 12.8
UPF1Q92900 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.332e-7■■□□□ 12.8
UPF1Q92900 EDEM3-203ENST00000439962 2872 ntTSL 1 (best)6.36□□□□□ -1.392e-7■■□□□ 12.8
UPF1Q92900 MAPK1IP1L-205ENST00000622254 2836 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.752e-7■■□□□ 12.8
UPF1Q92900 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.292e-7■■□□□ 12.8
UPF1Q92900 KPNB1-212ENST00000582126 653 ntTSL 518.01■□□□□ 0.473e-10■■□□□ 12.7
UPF1Q92900 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.684e-7■■□□□ 12.7
UPF1Q92900 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.216e-10■■□□□ 12.7
UPF1Q92900 ERI3-204ENST00000456170 1103 ntTSL 518.67■□□□□ 0.586e-10■■□□□ 12.7
UPF1Q92900 ERI3-202ENST00000372259 1332 ntTSL 5 BASIC14.54□□□□□ -0.086e-10■■□□□ 12.7
UPF1Q92900 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.198e-7■■□□□ 12.7
UPF1Q92900 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.278e-7■■□□□ 12.7
UPF1Q92900 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.11■□□□□ 0.016e-12■■□□□ 12.7
UPF1Q92900 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.325e-8■■□□□ 12.7
UPF1Q92900 METTL2A-201ENST00000311506 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.523e-6■■□□□ 12.7
UPF1Q92900 IQGAP1-218ENST00000633485 5863 ntTSL 58.93□□□□□ -0.984e-10■■□□□ 12.7
UPF1Q92900 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC32.53■■■□□ 2.82e-6■■□□□ 12.7
UPF1Q92900 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.112e-6■■□□□ 12.7
UPF1Q92900 MELTF-203ENST00000439320 629 ntTSL 326.65■■□□□ 1.862e-6■■□□□ 12.7
UPF1Q92900 SHISA5-203ENST00000417841 575 ntTSL 424.96■■□□□ 1.592e-6■■□□□ 12.7
UPF1Q92900 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC23.68■■□□□ 1.382e-6■■□□□ 12.7
UPF1Q92900 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.362e-6■■□□□ 12.7
UPF1Q92900 MELTF-205ENST00000473501 2757 ntTSL 220.46■□□□□ 0.872e-6■■□□□ 12.7
UPF1Q92900 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.37■□□□□ 0.852e-6■■□□□ 12.7
UPF1Q92900 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.682e-6■■□□□ 12.7
UPF1Q92900 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.622e-6■■□□□ 12.7
UPF1Q92900 UCK1-208ENST00000491309 2237 ntTSL 218.3■□□□□ 0.522e-6■■□□□ 12.7
UPF1Q92900 SLC29A3-201ENST00000373189 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.512e-6■■□□□ 12.7
UPF1Q92900 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.1■□□□□ 0.492e-6■■□□□ 12.7
UPF1Q92900 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.452e-6■■□□□ 12.7
UPF1Q92900 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.322e-6■■□□□ 12.7
UPF1Q92900 UCK1-202ENST00000372210 2051 ntTSL 1 (best) BASIC16.42■□□□□ 0.222e-6■■□□□ 12.7
UPF1Q92900 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.042e-6■■□□□ 12.7
UPF1Q92900 TPX2-201ENST00000300403 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.374e-11■■□□□ 12.7
UPF1Q92900 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC11.78□□□□□ -0.524e-11■■□□□ 12.7
UPF1Q92900 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.355e-6■■□□□ 12.7
UPF1Q92900 COX15-201ENST00000016171 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.022e-6■■□□□ 12.7
UPF1Q92900 IQGAP1-204ENST00000558957 2313 ntTSL 25.68□□□□□ -1.54e-7■■□□□ 12.7
UPF1Q92900 TIMM10B-205ENST00000533379 608 ntTSL 217.65■□□□□ 0.423e-10■■□□□ 12.7
UPF1Q92900 AC084337.2-202ENST00000640959 595 ntAPPRIS P5 TSL 4 BASIC17.12■□□□□ 0.333e-10■■□□□ 12.7
UPF1Q92900 TIMM10B-204ENST00000531462 516 ntTSL 315.1■□□□□ 0.013e-10■■□□□ 12.7
UPF1Q92900 AC084337.2-201ENST00000639224 589 ntAPPRIS ALT2 TSL 414.53□□□□□ -0.083e-10■■□□□ 12.7
UPF1Q92900 TIMM10B-201ENST00000254616 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.433e-10■■□□□ 12.7
UPF1Q92900 ATP2A3-209ENST00000571245 868 ntTSL 219.32■□□□□ 0.682e-7■■□□□ 12.7
UPF1Q92900 ATP2A3-210ENST00000572116 429 ntTSL 1 (best)15.46■□□□□ 0.072e-7■■□□□ 12.7
UPF1Q92900 SEPT5-203ENST00000406172 1996 ntTSL 531.67■■■□□ 2.664e-7■■□□□ 12.7
UPF1Q92900 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.014e-7■■□□□ 12.7
UPF1Q92900 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.16■■□□□ 1.34e-7■■□□□ 12.7
UPF1Q92900 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.94■□□□□ 0.784e-7■■□□□ 12.7
UPF1Q92900 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC17.63■□□□□ 0.414e-11■■□□□ 12.7
UPF1Q92900 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.1□□□□□ -0.154e-11■■□□□ 12.7
UPF1Q92900 ANO10-201ENST00000292246 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.684e-11■■□□□ 12.7
UPF1Q92900 SKA1-203ENST00000417656 1095 ntTSL 2 BASIC16.87■□□□□ 0.292e-46■■□□□ 12.7
UPF1Q92900 ATP7B-213ENST00000634620 5653 ntTSL 1 (best)12.36□□□□□ -0.432e-8■■□□□ 12.7
UPF1Q92900 AC005381.1-201ENST00000593065 769 ntTSL 3 BASIC15.96■□□□□ 0.155e-8■■□□□ 12.7
UPF1Q92900 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC12.36□□□□□ -0.432e-35■■□□□ 12.7
UPF1Q92900 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC11.92□□□□□ -0.52e-35■■□□□ 12.7
UPF1Q92900 ATG16L1-203ENST00000392017 3405 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.592e-35■■□□□ 12.7
UPF1Q92900 ATG16L1-215ENST00000479942 3559 ntTSL 1 (best)10.34□□□□□ -0.752e-35■■□□□ 12.7
UPF1Q92900 ATG16L1-205ENST00000392020 3213 ntAPPRIS ALT1 TSL 1 (best) BASIC10.19□□□□□ -0.782e-35■■□□□ 12.7
UPF1Q92900 ATG16L1-206ENST00000392021 3301 ntTSL 1 (best)9.66□□□□□ -0.862e-35■■□□□ 12.7
UPF1Q92900 ATG16L1-204ENST00000392018 3313 ntTSL 5 BASIC9.3□□□□□ -0.922e-35■■□□□ 12.7
UPF1Q92900 ATG16L1-214ENST00000474148 4208 ntTSL 29.15□□□□□ -0.942e-35■■□□□ 12.7
UPF1Q92900 BRD2-219ENST00000607833 2338 ntAPPRIS ALT2 TSL 1 (best)12.76□□□□□ -0.371e-7■■□□□ 12.7
UPF1Q92900 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.862e-6■■□□□ 12.7
UPF1Q92900 ELP5-205ENST00000570322 1083 ntTSL 323.02■■□□□ 1.282e-6■■□□□ 12.7
UPF1Q92900 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC22.95■■□□□ 1.262e-6■■□□□ 12.7
UPF1Q92900 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.752e-6■■□□□ 12.7
UPF1Q92900 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.33■□□□□ 0.682e-6■■□□□ 12.7
UPF1Q92900 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.27■□□□□ 0.522e-6■■□□□ 12.7
UPF1Q92900 GSE1-205ENST00000412692 6625 ntTSL 515.07■□□□□ 01e-6■■□□□ 12.7
UPF1Q92900 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.31e-6■■□□□ 12.7
UPF1Q92900 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.341e-6■■□□□ 12.7
UPF1Q92900 GSE1-207ENST00000469381 5885 ntTSL 212.04□□□□□ -0.481e-6■■□□□ 12.7
UPF1Q92900 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.437e-7■■□□□ 12.7
UPF1Q92900 IVNS1ABP-204ENST00000459929 3657 ntTSL 514.26□□□□□ -0.137e-7■■□□□ 12.7
UPF1Q92900 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC12.34□□□□□ -0.437e-7■■□□□ 12.7
UPF1Q92900 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.02■□□□□ 0.642e-12■■□□□ 12.7
UPF1Q92900 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-12■■□□□ 12.7
UPF1Q92900 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.62e-12■■□□□ 12.7
UPF1Q92900 KLHDC8B-203ENST00000462582 832 ntTSL 523.75■■□□□ 1.391e-6■■□□□ 12.7
UPF1Q92900 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.911e-6■■□□□ 12.7
UPF1Q92900 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.191e-6■■□□□ 12.6
UPF1Q92900 CLIC4-202ENST00000488683 2723 ntTSL 212.73□□□□□ -0.371e-6■■□□□ 12.6
UPF1Q92900 SLC7A8-211ENST00000528860 1499 ntTSL 220.84■□□□□ 0.931e-6■■□□□ 12.6
UPF1Q92900 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.13■□□□□ 0.011e-6■■□□□ 12.6
UPF1Q92900 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC28.87■■■□□ 2.213e-6■■□□□ 12.6
UPF1Q92900 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.443e-6■■□□□ 12.6
UPF1Q92900 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.353e-6■■□□□ 12.6
UPF1Q92900 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.248e-7■■□□□ 12.6
UPF1Q92900 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.298e-7■■□□□ 12.6
UPF1Q92900 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.478e-7■■□□□ 12.6
UPF1Q92900 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC11.97□□□□□ -0.498e-7■■□□□ 12.6
UPF1Q92900 WNK1-204ENST00000530271 11804 ntTSL 1 (best) BASIC10.74□□□□□ -0.698e-7■■□□□ 12.6
Retrieved 100 of 15,879 protein–RNA pairs in 108.6 ms