Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 HCG4B-203ENST00000450128 991 ntBASIC13.75□□□□□ -0.21
LINC01006Q8NI28 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 YBX1P5-201ENST00000509441 847 ntBASIC13.75□□□□□ -0.21
LINC01006Q8NI28 STK19B-204ENST00000512515 211 ntBASIC13.75□□□□□ -0.21
LINC01006Q8NI28 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 AC018845.2-201ENST00000568326 409 ntBASIC13.75□□□□□ -0.21
LINC01006Q8NI28 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 AC004790.2-201ENST00000623588 572 ntBASIC13.75□□□□□ -0.21
LINC01006Q8NI28 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC01006Q8NI28 BX276092.7-203ENST00000637198 1536 ntBASIC13.74□□□□□ -0.21
LINC01006Q8NI28 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 IGHV3-52-201ENST00000519770 353 ntBASIC13.74□□□□□ -0.21
LINC01006Q8NI28 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 SNHG9-202ENST00000564014 471 ntBASIC13.74□□□□□ -0.21
LINC01006Q8NI28 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 MIR4469-201ENST00000583919 79 ntBASIC13.74□□□□□ -0.21
LINC01006Q8NI28 STK25P1-201ENST00000585406 838 ntBASIC13.74□□□□□ -0.21
LINC01006Q8NI28 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 C20orf181-201ENST00000623918 480 ntBASIC13.74□□□□□ -0.21
LINC01006Q8NI28 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 AC093677.2-201ENST00000600169 1863 ntBASIC13.74□□□□□ -0.21
LINC01006Q8NI28 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC01006Q8NI28 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC01006Q8NI28 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
LINC01006Q8NI28 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC01006Q8NI28 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC01006Q8NI28 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC13.73□□□□□ -0.21
LINC01006Q8NI28 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC01006Q8NI28 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC01006Q8NI28 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms