Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 ANKRD20A6P-201ENST00000618763 204 ntBASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 AC138035.3-201ENST00000622706 2791 ntBASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC28AQ8IWP9 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 AC092068.3-201ENST00000587894 2016 ntBASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28AQ8IWP9 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms