Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC093909.1-201ENST00000504731 1122 ntBASIC18.93■□□□□ 0.62
SOX4Q06945 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX4Q06945 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX4Q06945 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.93■□□□□ 0.62
SOX4Q06945 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX4Q06945 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX4Q06945 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX4Q06945 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX4Q06945 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX4Q06945 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SOX4Q06945 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX4Q06945 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SOX4Q06945 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 AP002414.3-201ENST00000589352 1468 ntBASIC18.92■□□□□ 0.62
SOX4Q06945 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX4Q06945 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 IGHV3-22-201ENST00000520721 359 ntBASIC18.92■□□□□ 0.62
SOX4Q06945 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX4Q06945 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.92■□□□□ 0.62
SOX4Q06945 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.92■□□□□ 0.62
SOX4Q06945 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX4Q06945 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SOX4Q06945 AC008735.5-201ENST00000623544 497 ntBASIC18.92■□□□□ 0.62
SOX4Q06945 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX4Q06945 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 REXO1L11P-201ENST00000620964 1927 ntBASIC18.92■□□□□ 0.62
SOX4Q06945 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX4Q06945 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SOX4Q06945 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SOX4Q06945 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.91■□□□□ 0.62
SOX4Q06945 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX4Q06945 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 PRYP5-201ENST00000451909 266 ntBASIC18.91■□□□□ 0.62
SOX4Q06945 AC092910.1-201ENST00000482027 1129 ntBASIC18.91■□□□□ 0.62
SOX4Q06945 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.91■□□□□ 0.62
SOX4Q06945 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.91■□□□□ 0.62
SOX4Q06945 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.91■□□□□ 0.62
SOX4Q06945 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.91■□□□□ 0.62
SOX4Q06945 HLA-J-201ENST00000462773 1622 ntBASIC18.91■□□□□ 0.62
SOX4Q06945 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.91■□□□□ 0.62
SOX4Q06945 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
SOX4Q06945 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.91■□□□□ 0.62
SOX4Q06945 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX4Q06945 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX4Q06945 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.9■□□□□ 0.62
SOX4Q06945 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.9■□□□□ 0.62
SOX4Q06945 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
SOX4Q06945 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SOX4Q06945 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SOX4Q06945 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 RNF165-205ENST00000588679 2904 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX4Q06945 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 RPS2P28-201ENST00000314255 741 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 MIR574-201ENST00000385209 96 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX4Q06945 KLF4P1-201ENST00000412782 1185 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 AL020989.1-201ENST00000422979 469 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SOX4Q06945 AC098831.1-202ENST00000438821 336 ntBASIC18.9■□□□□ 0.62
SOX4Q06945 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms