Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
BDNFP23560 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.71■□□□□ 0.59
BDNFP23560 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.71■□□□□ 0.59
BDNFP23560 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.71■□□□□ 0.59
BDNFP23560 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
BDNFP23560 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
BDNFP23560 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.71■□□□□ 0.59
BDNFP23560 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.71■□□□□ 0.59
BDNFP23560 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
BDNFP23560 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.71■□□□□ 0.59
BDNFP23560 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.71■□□□□ 0.59
BDNFP23560 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.7■□□□□ 0.58
BDNFP23560 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.7■□□□□ 0.58
BDNFP23560 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.7■□□□□ 0.58
BDNFP23560 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.7■□□□□ 0.58
BDNFP23560 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.7■□□□□ 0.58
BDNFP23560 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.7■□□□□ 0.58
BDNFP23560 AP000867.4-201ENST00000641616 219 ntBASIC18.7■□□□□ 0.58
BDNFP23560 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
BDNFP23560 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 BCL2-203ENST00000589955 5011 ntBASIC18.7■□□□□ 0.58
BDNFP23560 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
BDNFP23560 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
BDNFP23560 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BDNFP23560 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.69■□□□□ 0.58
BDNFP23560 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.69■□□□□ 0.58
BDNFP23560 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 AL662844.1-201ENST00000546340 181 ntBASIC18.69■□□□□ 0.58
BDNFP23560 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.69■□□□□ 0.58
BDNFP23560 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.69■□□□□ 0.58
BDNFP23560 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.69■□□□□ 0.58
BDNFP23560 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BDNFP23560 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.69■□□□□ 0.58
BDNFP23560 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.68■□□□□ 0.58
BDNFP23560 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.68■□□□□ 0.58
BDNFP23560 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.68■□□□□ 0.58
BDNFP23560 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms