Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 AC087388.1-201ENST00000571370 1112 ntBASIC20.54■□□□□ 0.88
CTDNEP1O95476 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CTDNEP1O95476 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTDNEP1O95476 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 BX276092.5-203ENST00000456199 560 ntBASIC20.53■□□□□ 0.88
CTDNEP1O95476 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 KRT18P35-201ENST00000510488 1269 ntBASIC20.53■□□□□ 0.88
CTDNEP1O95476 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 AL121672.3-201ENST00000608644 468 ntBASIC20.53■□□□□ 0.88
CTDNEP1O95476 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTDNEP1O95476 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.53■□□□□ 0.88
CTDNEP1O95476 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTDNEP1O95476 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.52■□□□□ 0.88
CTDNEP1O95476 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CTDNEP1O95476 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTDNEP1O95476 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTDNEP1O95476 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
CTDNEP1O95476 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.52■□□□□ 0.88
CTDNEP1O95476 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
CTDNEP1O95476 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.52■□□□□ 0.88
CTDNEP1O95476 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.52■□□□□ 0.88
CTDNEP1O95476 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTDNEP1O95476 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTDNEP1O95476 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTDNEP1O95476 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CTDNEP1O95476 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CTDNEP1O95476 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.52■□□□□ 0.87
CTDNEP1O95476 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 TSSC2-201ENST00000450217 709 ntBASIC20.51■□□□□ 0.87
CTDNEP1O95476 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 AC011840.4-201ENST00000578471 627 ntBASIC20.51■□□□□ 0.87
CTDNEP1O95476 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms