Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SSX4O60224 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SSX4O60224 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
SSX4O60224 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SSX4O60224 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
SSX4O60224 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.16■□□□□ 0.18
SSX4O60224 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SSX4O60224 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.16■□□□□ 0.18
SSX4O60224 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SSX4O60224 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.16■□□□□ 0.18
SSX4O60224 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.16■□□□□ 0.18
SSX4O60224 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.16■□□□□ 0.18
SSX4O60224 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SSX4O60224 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.16■□□□□ 0.18
SSX4O60224 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SSX4O60224 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SSX4O60224 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.16■□□□□ 0.18
SSX4O60224 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SSX4O60224 LINC00602-201ENST00000629776 2065 ntBASIC16.15■□□□□ 0.18
SSX4O60224 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.15■□□□□ 0.18
SSX4O60224 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.15■□□□□ 0.18
SSX4O60224 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SSX4O60224 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
SSX4O60224 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.15■□□□□ 0.18
SSX4O60224 KRT8P45-201ENST00000414328 1447 ntBASIC16.15■□□□□ 0.18
SSX4O60224 PCED1CP-201ENST00000419887 785 ntBASIC16.15■□□□□ 0.18
SSX4O60224 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.15■□□□□ 0.18
SSX4O60224 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 AL441883.1-201ENST00000566170 1045 ntBASIC16.15■□□□□ 0.18
SSX4O60224 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.15■□□□□ 0.18
SSX4O60224 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 FLJ38576-201ENST00000623820 2459 ntBASIC16.15■□□□□ 0.18
SSX4O60224 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.15■□□□□ 0.18
SSX4O60224 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.15■□□□□ 0.18
SSX4O60224 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.15■□□□□ 0.18
SSX4O60224 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SSX4O60224 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SSX4O60224 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.14■□□□□ 0.18
SSX4O60224 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.18
SSX4O60224 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
SSX4O60224 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SSX4O60224 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms