Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGB3O15347 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
HMGB3O15347 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HMGB3O15347 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
HMGB3O15347 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HMGB3O15347 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.32□□□□□ -0.12
HMGB3O15347 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
HMGB3O15347 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGB3O15347 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC14.32□□□□□ -0.12
HMGB3O15347 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGB3O15347 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC14.32□□□□□ -0.12
HMGB3O15347 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGB3O15347 PNMA6B-201ENST00000538162 1200 ntBASIC14.32□□□□□ -0.12
HMGB3O15347 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC14.32□□□□□ -0.12
HMGB3O15347 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HMGB3O15347 C1QL1P1-201ENST00000568105 661 ntBASIC14.32□□□□□ -0.12
HMGB3O15347 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
HMGB3O15347 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.32□□□□□ -0.12
HMGB3O15347 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.32□□□□□ -0.12
HMGB3O15347 HTR7P1-201ENST00000538670 1336 ntBASIC14.32□□□□□ -0.12
HMGB3O15347 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.32□□□□□ -0.12
HMGB3O15347 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.32□□□□□ -0.12
HMGB3O15347 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HMGB3O15347 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 AL355312.1-201ENST00000407115 2176 ntBASIC14.32□□□□□ -0.12
HMGB3O15347 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGB3O15347 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
HMGB3O15347 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 POU5F1P3-201ENST00000428824 1078 ntBASIC14.31□□□□□ -0.12
HMGB3O15347 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 OR2A1-AS1-207ENST00000486094 819 ntBASIC14.31□□□□□ -0.12
HMGB3O15347 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC14.31□□□□□ -0.12
HMGB3O15347 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC14.31□□□□□ -0.12
HMGB3O15347 AL121832.2-201ENST00000610979 668 ntBASIC14.31□□□□□ -0.12
HMGB3O15347 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGB3O15347 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGB3O15347 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
HMGB3O15347 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.31□□□□□ -0.12
HMGB3O15347 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.3□□□□□ -0.12
HMGB3O15347 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 CROCCP2-202ENST00000412962 2773 ntBASIC14.3□□□□□ -0.12
HMGB3O15347 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms