Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.01■□□□□ 0.31
CDX4O14627 STK25P1-201ENST00000585406 838 ntBASIC17.01■□□□□ 0.31
CDX4O14627 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX4O14627 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.01■□□□□ 0.31
CDX4O14627 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CDX4O14627 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CDX4O14627 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CDX4O14627 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDX4O14627 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CDX4O14627 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17■□□□□ 0.31
CDX4O14627 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17■□□□□ 0.31
CDX4O14627 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17■□□□□ 0.31
CDX4O14627 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17■□□□□ 0.31
CDX4O14627 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17■□□□□ 0.31
CDX4O14627 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 GK-202ENST00000378941 458 ntTSL 3 BASIC17■□□□□ 0.31
CDX4O14627 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17■□□□□ 0.31
CDX4O14627 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17■□□□□ 0.31
CDX4O14627 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17■□□□□ 0.31
CDX4O14627 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17■□□□□ 0.31
CDX4O14627 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17■□□□□ 0.31
CDX4O14627 PI4KAP1-204ENST00000612579 1703 ntBASIC17■□□□□ 0.31
CDX4O14627 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17■□□□□ 0.31
CDX4O14627 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
CDX4O14627 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDX4O14627 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
CDX4O14627 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17■□□□□ 0.31
CDX4O14627 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 AFG3L1P-217ENST00000557444 2447 ntBASIC16.99■□□□□ 0.31
CDX4O14627 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX4O14627 AC236430.1-201ENST00000402231 743 ntBASIC16.99■□□□□ 0.31
CDX4O14627 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX4O14627 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 FAM185BP-201ENST00000443595 716 ntBASIC16.99■□□□□ 0.31
CDX4O14627 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX4O14627 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.99■□□□□ 0.31
CDX4O14627 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX4O14627 AC087641.1-201ENST00000557561 1021 ntBASIC16.99■□□□□ 0.31
CDX4O14627 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX4O14627 AC012645.4-201ENST00000610691 1061 ntBASIC16.99■□□□□ 0.31
CDX4O14627 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX4O14627 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX4O14627 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.99■□□□□ 0.31
CDX4O14627 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX4O14627 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 PHGDH-209ENST00000641074 1780 ntBASIC16.99■□□□□ 0.31
CDX4O14627 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CDX4O14627 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CDX4O14627 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.99■□□□□ 0.31
CDX4O14627 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDX4O14627 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CDX4O14627 ANO7L1-203ENST00000602586 1720 ntBASIC16.99■□□□□ 0.31
CDX4O14627 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX4O14627 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CDX4O14627 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
CDX4O14627 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CDX4O14627 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
CDX4O14627 AC055876.3-201ENST00000431496 288 ntBASIC16.98■□□□□ 0.31
CDX4O14627 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.98■□□□□ 0.31
CDX4O14627 AC002472.2-201ENST00000442739 958 ntBASIC16.98■□□□□ 0.31
CDX4O14627 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX4O14627 AC112191.1-201ENST00000523689 701 ntBASIC16.98■□□□□ 0.31
CDX4O14627 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.98■□□□□ 0.31
CDX4O14627 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.98■□□□□ 0.31
CDX4O14627 AC005225.4-201ENST00000557330 545 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms