Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
SMKR1H3BMG3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 ANKRD20A6P-201ENST00000618763 204 ntBASIC13.02□□□□□ -0.33
SMKR1H3BMG3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 GPAT2P1-201ENST00000444924 1672 ntBASIC13.02□□□□□ -0.33
SMKR1H3BMG3 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SMKR1H3BMG3 LINC00304-203ENST00000565008 1864 ntBASIC13.02□□□□□ -0.33
SMKR1H3BMG3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 AC060834.1-201ENST00000443027 2032 ntBASIC13.01□□□□□ -0.33
SMKR1H3BMG3 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SMKR1H3BMG3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13□□□□□ -0.33
SMKR1H3BMG3 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13□□□□□ -0.33
SMKR1H3BMG3 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13□□□□□ -0.33
SMKR1H3BMG3 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SMKR1H3BMG3 AC026271.2-201ENST00000428091 497 ntBASIC13□□□□□ -0.33
SMKR1H3BMG3 TSPY6P-201ENST00000448518 926 ntBASIC13□□□□□ -0.33
SMKR1H3BMG3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC13□□□□□ -0.33
SMKR1H3BMG3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms