Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHISA3A0PJX4 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHISA3A0PJX4 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHISA3A0PJX4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SHISA3A0PJX4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.5■□□□□ 0.07
SHISA3A0PJX4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 LINC00554-201ENST00000564841 3011 ntBASIC15.49■□□□□ 0.07
SHISA3A0PJX4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 AC009065.1-201ENST00000564055 1225 ntBASIC15.49■□□□□ 0.07
SHISA3A0PJX4 DGCR10-201ENST00000609839 495 ntBASIC15.49■□□□□ 0.07
SHISA3A0PJX4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 AC016396.2-201ENST00000562575 1417 ntBASIC15.49■□□□□ 0.07
SHISA3A0PJX4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 AC078925.2-201ENST00000624013 1973 ntBASIC15.49■□□□□ 0.07
SHISA3A0PJX4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.49■□□□□ 0.07
SHISA3A0PJX4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 AC006449.5-201ENST00000610658 2098 ntBASIC15.48■□□□□ 0.07
SHISA3A0PJX4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 FAM197Y1-201ENST00000421178 764 ntBASIC15.48■□□□□ 0.07
SHISA3A0PJX4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 AC073648.6-201ENST00000641589 218 ntBASIC15.48■□□□□ 0.07
SHISA3A0PJX4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 KRT8P47-201ENST00000604727 1398 ntBASIC15.48■□□□□ 0.07
SHISA3A0PJX4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
SHISA3A0PJX4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHISA3A0PJX4 AC132872.4-202ENST00000622924 2756 ntBASIC15.47■□□□□ 0.07
SHISA3A0PJX4 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
SHISA3A0PJX4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.47■□□□□ 0.07
SHISA3A0PJX4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHISA3A0PJX4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.47■□□□□ 0.07
SHISA3A0PJX4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHISA3A0PJX4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.47■□□□□ 0.07
SHISA3A0PJX4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.47■□□□□ 0.07
SHISA3A0PJX4 AC092053.1-201ENST00000605787 1936 ntBASIC15.47■□□□□ 0.07
SHISA3A0PJX4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms