Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 AP002414.1-201ENST00000391405 1147 ntBASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 AC096734.2-201ENST00000562054 433 ntBASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 GGTLC5P-201ENST00000617623 998 ntBASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC27.31■■□□□ 1.96
CDK11AQ9UQ88 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 CNN2P11-201ENST00000429351 262 ntBASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 IGHV3-52-201ENST00000519770 353 ntBASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 PDPK2P-202ENST00000562415 1191 ntBASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 LINC02084-201ENST00000606069 1096 ntBASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC27.3■■□□□ 1.96
CDK11AQ9UQ88 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 RFPL4AP1-201ENST00000530883 850 ntBASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
CDK11AQ9UQ88 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 AC009336.1-201ENST00000608941 1553 ntBASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 PON3-203ENST00000427422 894 ntTSL 3 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 AL353135.1-201ENST00000606729 504 ntBASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 AL078644.1-201ENST00000609881 752 ntBASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC27.28■■□□□ 1.96
CDK11AQ9UQ88 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 PTCHD3P3-201ENST00000403073 906 ntBASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CDK11AQ9UQ88 CYMP-203ENST00000474680 1263 ntBASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms