Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC141257.4-201ENST00000634557 245 ntBASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 AC136944.6-201ENST00000634818 245 ntBASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 SLC25A3P1-201ENST00000443844 931 ntBASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 AC133561.5-201ENST00000635547 218 ntBASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 AC092865.7-201ENST00000641832 219 ntBASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC39Q9UFE4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 AC006116.8-202ENST00000587620 1550 ntBASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 LIN28AP1-201ENST00000429574 405 ntBASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
CCDC39Q9UFE4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 AL138966.2-201ENST00000621997 464 ntBASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 PHGDH-209ENST00000641074 1780 ntBASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CCDC39Q9UFE4 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 AC008894.3-201ENST00000624324 3103 ntBASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms