Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTCHD1Q96NR3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD1Q96NR3 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD1Q96NR3 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD1Q96NR3 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD1Q96NR3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTCHD1Q96NR3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 AC138028.4-201ENST00000564984 1845 ntBASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 DUSP5P1-201ENST00000441325 1139 ntBASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 FLJ13224-201ENST00000313737 1514 ntBASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PTCHD1Q96NR3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 AC068880.1-201ENST00000507289 2297 ntBASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 AL121772.3-201ENST00000610840 674 ntBASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.77■□□□□ 0.28
PTCHD1Q96NR3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 AC125634.1-201ENST00000438758 1403 ntBASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
PTCHD1Q96NR3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 NOC2LP2-201ENST00000407594 1944 ntBASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 POM121L3P-201ENST00000419331 1163 ntBASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 KRT126P-201ENST00000549467 1181 ntBASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 AL138831.2-201ENST00000606564 490 ntBASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms