Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 KRT18P65-201ENST00000439811 1286 ntBASIC13.35□□□□□ -0.27
LINC00477Q96M19 DDX43P3-201ENST00000441064 443 ntBASIC13.35□□□□□ -0.27
LINC00477Q96M19 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 ECEL1P2-202ENST00000465689 757 ntBASIC13.35□□□□□ -0.27
LINC00477Q96M19 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 AC024563.2-201ENST00000603282 481 ntBASIC13.35□□□□□ -0.27
LINC00477Q96M19 FAM87A-204ENST00000613235 858 ntBASIC13.35□□□□□ -0.27
LINC00477Q96M19 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 AL157888.1-201ENST00000631930 593 ntBASIC13.35□□□□□ -0.27
LINC00477Q96M19 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 AC108860.2-201ENST00000562760 2183 ntBASIC13.35□□□□□ -0.27
LINC00477Q96M19 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
LINC00477Q96M19 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00477Q96M19 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 ECEL1P3-201ENST00000427961 737 ntBASIC13.34□□□□□ -0.27
LINC00477Q96M19 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 KRT18P22-201ENST00000402024 1347 ntBASIC13.34□□□□□ -0.27
LINC00477Q96M19 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00477Q96M19 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00477Q96M19 FER1L4-210ENST00000615531 5998 ntBASIC13.33□□□□□ -0.27
LINC00477Q96M19 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
LINC00477Q96M19 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
LINC00477Q96M19 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms