Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 AC110285.5-201ENST00000611501 352 ntBASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 AL445675.2-201ENST00000620291 557 ntBASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.19□□□□□ -0.14
RPUSD4Q96CM3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 DOC2GP-204ENST00000639052 2548 ntBASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 AC124016.1-201ENST00000609552 612 ntBASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RPUSD4Q96CM3 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PCDHA14-201ENST00000506751 2298 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 HYMAI-201ENST00000635591 3347 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 AL596257.1-201ENST00000641463 2694 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 AC133681.1-201ENST00000465482 601 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 AP002982.1-201ENST00000492365 877 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms