Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC23.34■■□□□ 1.33
USHBP1Q8N6Y0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 RPS15P9-201ENST00000494093 319 ntBASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 AC098818.2-201ENST00000564925 2320 ntBASIC23.33■■□□□ 1.33
USHBP1Q8N6Y0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 PC-208ENST00000529047 1607 ntTSL 3 BASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 NCF1C-201ENST00000438382 1427 ntBASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.33■■□□□ 1.32
USHBP1Q8N6Y0 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 REXO1L9P-201ENST00000604264 2108 ntBASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 AC093503.3-201ENST00000624917 2352 ntBASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 CRYGEP-201ENST00000412192 528 ntBASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
USHBP1Q8N6Y0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 AC211486.1-202ENST00000416371 468 ntBASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 HCG4B-203ENST00000450128 991 ntBASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 AC211476.1-201ENST00000503899 468 ntBASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 AC018445.3-201ENST00000624177 1945 ntBASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
USHBP1Q8N6Y0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 AP000997.3-201ENST00000623333 2250 ntBASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 IGLL3P-201ENST00000412472 434 ntBASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 MCCD1P2-201ENST00000423228 335 ntBASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 HTR5BP-201ENST00000430851 1154 ntBASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 VN2R19P-201ENST00000442399 1052 ntBASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms