Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
PRKDCP78527 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC12.72□□□□□ -0.37
PRKDCP78527 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC12.72□□□□□ -0.37
PRKDCP78527 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 PCDHAC2-203ENST00000615316 3011 ntBASIC12.71□□□□□ -0.37
PRKDCP78527 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC12.71□□□□□ -0.37
PRKDCP78527 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.71□□□□□ -0.37
PRKDCP78527 AC092552.1-201ENST00000547243 906 ntBASIC12.71□□□□□ -0.37
PRKDCP78527 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.71□□□□□ -0.37
PRKDCP78527 AC068587.10-201ENST00000641210 219 ntBASIC12.71□□□□□ -0.37
PRKDCP78527 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC12.71□□□□□ -0.37
PRKDCP78527 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC12.71□□□□□ -0.37
PRKDCP78527 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.71□□□□□ -0.37
PRKDCP78527 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 RBPMS2P1-201ENST00000437762 623 ntBASIC12.71□□□□□ -0.37
PRKDCP78527 FAM8A2P-201ENST00000528813 1142 ntBASIC12.71□□□□□ -0.37
PRKDCP78527 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.71□□□□□ -0.37
PRKDCP78527 RAB43P1-201ENST00000561790 589 ntBASIC12.71□□□□□ -0.37
PRKDCP78527 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
PRKDCP78527 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC12.71□□□□□ -0.37
PRKDCP78527 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 AC069120.2-201ENST00000524091 540 ntBASIC12.71□□□□□ -0.38
PRKDCP78527 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.38
PRKDCP78527 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC12.71□□□□□ -0.38
PRKDCP78527 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC12.71□□□□□ -0.38
PRKDCP78527 COX11-210ENST00000639671 696 ntBASIC12.71□□□□□ -0.38
PRKDCP78527 REXO1L6P-201ENST00000603433 1515 ntBASIC12.71□□□□□ -0.38
PRKDCP78527 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
PRKDCP78527 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC12.71□□□□□ -0.38
PRKDCP78527 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
PRKDCP78527 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PRKDCP78527 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.71□□□□□ -0.38
PRKDCP78527 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.7□□□□□ -0.38
PRKDCP78527 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 RPL28-206ENST00000558752 671 ntTSL 3 BASIC12.7□□□□□ -0.38
PRKDCP78527 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 AC009118.2-201ENST00000613275 655 ntBASIC12.7□□□□□ -0.38
PRKDCP78527 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
PRKDCP78527 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.7□□□□□ -0.38
PRKDCP78527 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
PRKDCP78527 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
PRKDCP78527 AC018445.3-201ENST00000624177 1945 ntBASIC12.7□□□□□ -0.38
PRKDCP78527 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 ANKRD19P-201ENST00000338192 862 ntBASIC12.7□□□□□ -0.38
PRKDCP78527 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
PRKDCP78527 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.7□□□□□ -0.38
PRKDCP78527 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
PRKDCP78527 BNIP3P42-201ENST00000454982 569 ntBASIC12.7□□□□□ -0.38
PRKDCP78527 AC079140.1-201ENST00000508039 487 ntBASIC12.7□□□□□ -0.38
PRKDCP78527 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 BNIP3P29-201ENST00000598302 571 ntBASIC12.7□□□□□ -0.38
PRKDCP78527 AC011447.5-201ENST00000616168 564 ntBASIC12.7□□□□□ -0.38
PRKDCP78527 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PRKDCP78527 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
PRKDCP78527 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms