Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
PEX3P56589 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.6■□□□□ 0.73
PEX3P56589 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
PEX3P56589 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.59■□□□□ 0.73
PEX3P56589 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PEX3P56589 DDX43P3-201ENST00000441064 443 ntBASIC19.59■□□□□ 0.73
PEX3P56589 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 MIR5100-201ENST00000579544 119 ntBASIC19.59■□□□□ 0.73
PEX3P56589 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.59■□□□□ 0.73
PEX3P56589 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 INTS4P1-201ENST00000438455 1935 ntBASIC19.59■□□□□ 0.73
PEX3P56589 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
PEX3P56589 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.58■□□□□ 0.73
PEX3P56589 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.58■□□□□ 0.73
PEX3P56589 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 SLC25A6P5-201ENST00000435663 894 ntBASIC19.58■□□□□ 0.72
PEX3P56589 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 UNC93B7-201ENST00000509439 705 ntBASIC19.58■□□□□ 0.72
PEX3P56589 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 KRT126P-201ENST00000549467 1181 ntBASIC19.58■□□□□ 0.72
PEX3P56589 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.58■□□□□ 0.72
PEX3P56589 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 AL591684.3-201ENST00000605187 298 ntBASIC19.58■□□□□ 0.72
PEX3P56589 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
PEX3P56589 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
PEX3P56589 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.57■□□□□ 0.72
PEX3P56589 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 FAM220CP-201ENST00000395253 831 ntBASIC19.57■□□□□ 0.72
PEX3P56589 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 AL450487.1-201ENST00000426799 995 ntBASIC19.57■□□□□ 0.72
PEX3P56589 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.57■□□□□ 0.72
PEX3P56589 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.57■□□□□ 0.72
PEX3P56589 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.57■□□□□ 0.72
PEX3P56589 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.57■□□□□ 0.72
PEX3P56589 AL133373.2-201ENST00000623187 2828 ntBASIC19.57■□□□□ 0.72
PEX3P56589 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PEX3P56589 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms