Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
PEX3P56589 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.6■□□□□ 0.73
PEX3P56589 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
PEX3P56589 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
PEX3P56589 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.59■□□□□ 0.73
PEX3P56589 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PEX3P56589 DDX43P3-201ENST00000441064 443 ntBASIC19.59■□□□□ 0.73
PEX3P56589 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 MIR5100-201ENST00000579544 119 ntBASIC19.59■□□□□ 0.73
PEX3P56589 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.59■□□□□ 0.73
PEX3P56589 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.59■□□□□ 0.73
PEX3P56589 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PEX3P56589 INTS4P1-201ENST00000438455 1935 ntBASIC19.59■□□□□ 0.73
PEX3P56589 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
PEX3P56589 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.58■□□□□ 0.73
PEX3P56589 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.58■□□□□ 0.73
PEX3P56589 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
PEX3P56589 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 SLC25A6P5-201ENST00000435663 894 ntBASIC19.58■□□□□ 0.72
PEX3P56589 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 UNC93B7-201ENST00000509439 705 ntBASIC19.58■□□□□ 0.72
PEX3P56589 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 KRT126P-201ENST00000549467 1181 ntBASIC19.58■□□□□ 0.72
PEX3P56589 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.58■□□□□ 0.72
PEX3P56589 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 AL591684.3-201ENST00000605187 298 ntBASIC19.58■□□□□ 0.72
PEX3P56589 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
PEX3P56589 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
PEX3P56589 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PEX3P56589 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.58■□□□□ 0.72
PEX3P56589 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.57■□□□□ 0.72
PEX3P56589 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 FAM220CP-201ENST00000395253 831 ntBASIC19.57■□□□□ 0.72
PEX3P56589 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 AL450487.1-201ENST00000426799 995 ntBASIC19.57■□□□□ 0.72
PEX3P56589 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.57■□□□□ 0.72
PEX3P56589 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
PEX3P56589 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.57■□□□□ 0.72
PEX3P56589 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PEX3P56589 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.57■□□□□ 0.72
PEX3P56589 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
PEX3P56589 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.57■□□□□ 0.72
PEX3P56589 AL133373.2-201ENST00000623187 2828 ntBASIC19.57■□□□□ 0.72
PEX3P56589 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PEX3P56589 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms