Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 RN7SL606P-201ENST00000472779 293 ntBASIC17.44■□□□□ 0.38
CDH3P22223 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH3P22223 AC104819.1-201ENST00000504587 486 ntBASIC17.44■□□□□ 0.38
CDH3P22223 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.44■□□□□ 0.38
CDH3P22223 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.44■□□□□ 0.38
CDH3P22223 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 AC011840.4-201ENST00000578471 627 ntBASIC17.44■□□□□ 0.38
CDH3P22223 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.44■□□□□ 0.38
CDH3P22223 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 LINC00602-201ENST00000629776 2065 ntBASIC17.44■□□□□ 0.38
CDH3P22223 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.44■□□□□ 0.38
CDH3P22223 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.43■□□□□ 0.38
CDH3P22223 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.43■□□□□ 0.38
CDH3P22223 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 AC233702.3-201ENST00000578656 1387 ntBASIC17.43■□□□□ 0.38
CDH3P22223 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.43■□□□□ 0.38
CDH3P22223 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 AL450487.1-201ENST00000426799 995 ntBASIC17.43■□□□□ 0.38
CDH3P22223 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.43■□□□□ 0.38
CDH3P22223 AC012615.1-201ENST00000565797 1299 ntBASIC17.43■□□□□ 0.38
CDH3P22223 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.43■□□□□ 0.38
CDH3P22223 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.43■□□□□ 0.38
CDH3P22223 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.43■□□□□ 0.38
CDH3P22223 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.43■□□□□ 0.38
CDH3P22223 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.43■□□□□ 0.38
CDH3P22223 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CDH3P22223 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CDH3P22223 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.43■□□□□ 0.38
CDH3P22223 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CDH3P22223 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
CDH3P22223 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH3P22223 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
CDH3P22223 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CDH3P22223 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 AC073592.3-201ENST00000625118 1834 ntBASIC17.42■□□□□ 0.38
CDH3P22223 ESPNP-201ENST00000270691 2015 ntBASIC17.42■□□□□ 0.38
CDH3P22223 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.42■□□□□ 0.38
CDH3P22223 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.42■□□□□ 0.38
CDH3P22223 LINC00167-201ENST00000530583 1419 ntBASIC17.42■□□□□ 0.38
CDH3P22223 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH3P22223 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.42■□□□□ 0.38
CDH3P22223 AC074051.2-201ENST00000565115 352 ntBASIC17.42■□□□□ 0.38
CDH3P22223 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CDH3P22223 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.42■□□□□ 0.38
CDH3P22223 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 WIZP1-201ENST00000531444 2299 ntBASIC17.42■□□□□ 0.38
CDH3P22223 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 AC084018.2-201ENST00000613093 2607 ntBASIC17.42■□□□□ 0.38
CDH3P22223 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.42■□□□□ 0.38
CDH3P22223 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH3P22223 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.42■□□□□ 0.38
CDH3P22223 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CDH3P22223 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CDH3P22223 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CDH3P22223 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
CDH3P22223 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDH3P22223 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CDH3P22223 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
CDH3P22223 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms