Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC027601.4-201ENST00000611259 610 ntBASIC18.38■□□□□ 0.53
HMGA1P17096 GPALPP1-207ENST00000611650 899 ntBASIC18.38■□□□□ 0.53
HMGA1P17096 AC004706.3-202ENST00000621574 984 ntBASIC18.38■□□□□ 0.53
HMGA1P17096 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGA1P17096 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGA1P17096 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGA1P17096 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGA1P17096 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGA1P17096 AC138028.4-201ENST00000564984 1845 ntBASIC18.37■□□□□ 0.53
HMGA1P17096 BICD1-207ENST00000551848 1962 ntBASIC18.37■□□□□ 0.53
HMGA1P17096 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGA1P17096 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGA1P17096 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGA1P17096 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 AC009947.1-201ENST00000444350 727 ntBASIC18.37■□□□□ 0.53
HMGA1P17096 SIGLEC30P-201ENST00000455569 941 ntBASIC18.37■□□□□ 0.53
HMGA1P17096 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.37■□□□□ 0.53
HMGA1P17096 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGA1P17096 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 FAM197Y3-203ENST00000618346 717 ntBASIC18.37■□□□□ 0.53
HMGA1P17096 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.37■□□□□ 0.53
HMGA1P17096 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HMGA1P17096 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HMGA1P17096 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.37■□□□□ 0.53
HMGA1P17096 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HMGA1P17096 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGA1P17096 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGA1P17096 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGA1P17096 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGA1P17096 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGA1P17096 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HMGA1P17096 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGA1P17096 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
HMGA1P17096 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HMGA1P17096 AC002558.1-201ENST00000488906 803 ntBASIC18.36■□□□□ 0.53
HMGA1P17096 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HMGA1P17096 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.36■□□□□ 0.53
HMGA1P17096 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
HMGA1P17096 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.36■□□□□ 0.53
HMGA1P17096 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HMGA1P17096 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
HMGA1P17096 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGA1P17096 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGA1P17096 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HMGA1P17096 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGA1P17096 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGA1P17096 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HMGA1P17096 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGA1P17096 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGA1P17096 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGA1P17096 AC136632.2-201ENST00000512891 861 ntBASIC18.35■□□□□ 0.53
HMGA1P17096 IGHV3-52-201ENST00000519770 353 ntBASIC18.35■□□□□ 0.53
HMGA1P17096 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGA1P17096 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGA1P17096 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGA1P17096 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGA1P17096 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGA1P17096 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGA1P17096 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGA1P17096 AC006504.4-201ENST00000592118 1568 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HMGA1P17096 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGA1P17096 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms