Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
VIMP08670 PCDHA1-201ENST00000378133 2726 ntBASIC17.9■□□□□ 0.46
VIMP08670 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
VIMP08670 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 MIR149-201ENST00000384879 89 ntBASIC17.9■□□□□ 0.46
VIMP08670 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.9■□□□□ 0.46
VIMP08670 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.9■□□□□ 0.46
VIMP08670 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VIMP08670 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.9■□□□□ 0.46
VIMP08670 MIR4758-201ENST00000577688 71 ntBASIC17.9■□□□□ 0.46
VIMP08670 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
VIMP08670 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
VIMP08670 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VIMP08670 LINC00304-203ENST00000565008 1864 ntBASIC17.9■□□□□ 0.46
VIMP08670 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.9■□□□□ 0.46
VIMP08670 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.9■□□□□ 0.46
VIMP08670 AC079328.2-201ENST00000561241 3354 ntBASIC17.9■□□□□ 0.46
VIMP08670 AC100803.2-201ENST00000562459 1963 ntBASIC17.9■□□□□ 0.46
VIMP08670 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.89■□□□□ 0.46
VIMP08670 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
VIMP08670 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
VIMP08670 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
VIMP08670 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
VIMP08670 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
VIMP08670 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
VIMP08670 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.89■□□□□ 0.45
VIMP08670 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.89■□□□□ 0.45
VIMP08670 AC091390.4-202ENST00000476426 537 ntBASIC17.89■□□□□ 0.45
VIMP08670 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.89■□□□□ 0.45
VIMP08670 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
VIMP08670 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.89■□□□□ 0.45
VIMP08670 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.89■□□□□ 0.45
VIMP08670 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 AL596257.1-201ENST00000641463 2694 ntBASIC17.89■□□□□ 0.45
VIMP08670 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.89■□□□□ 0.45
VIMP08670 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.89■□□□□ 0.45
VIMP08670 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
VIMP08670 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VIMP08670 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.88■□□□□ 0.45
VIMP08670 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VIMP08670 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
VIMP08670 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.88■□□□□ 0.45
VIMP08670 HLA-J-201ENST00000462773 1622 ntBASIC17.88■□□□□ 0.45
VIMP08670 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.88■□□□□ 0.45
VIMP08670 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
VIMP08670 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.88■□□□□ 0.45
VIMP08670 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.88■□□□□ 0.45
VIMP08670 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms