Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
SEMA3DO95025 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
SEMA3DO95025 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.08■□□□□ 0.32
SEMA3DO95025 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SEMA3DO95025 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
SEMA3DO95025 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.07■□□□□ 0.32
SEMA3DO95025 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.07■□□□□ 0.32
SEMA3DO95025 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.07■□□□□ 0.32
SEMA3DO95025 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.07■□□□□ 0.32
SEMA3DO95025 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 KRT8P47-201ENST00000604727 1398 ntBASIC17.07■□□□□ 0.32
SEMA3DO95025 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.07■□□□□ 0.32
SEMA3DO95025 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
SEMA3DO95025 AC112698.1-201ENST00000510299 916 ntBASIC17.07■□□□□ 0.32
SEMA3DO95025 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.07■□□□□ 0.32
SEMA3DO95025 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SEMA3DO95025 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.07■□□□□ 0.32
SEMA3DO95025 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SEMA3DO95025 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SEMA3DO95025 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
SEMA3DO95025 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SEMA3DO95025 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
SEMA3DO95025 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SEMA3DO95025 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.06■□□□□ 0.32
SEMA3DO95025 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.06■□□□□ 0.32
SEMA3DO95025 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.06■□□□□ 0.32
SEMA3DO95025 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.06■□□□□ 0.32
SEMA3DO95025 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.06■□□□□ 0.32
SEMA3DO95025 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.06■□□□□ 0.32
SEMA3DO95025 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.06■□□□□ 0.32
SEMA3DO95025 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
SEMA3DO95025 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.06■□□□□ 0.32
SEMA3DO95025 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SEMA3DO95025 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
SEMA3DO95025 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.05■□□□□ 0.32
SEMA3DO95025 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SEMA3DO95025 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 LINC00896-202ENST00000609602 2128 ntBASIC17.05■□□□□ 0.32
SEMA3DO95025 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SEMA3DO95025 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SEMA3DO95025 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.05■□□□□ 0.32
SEMA3DO95025 AL645929.1-201ENST00000420084 975 ntBASIC17.05■□□□□ 0.32
SEMA3DO95025 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.05■□□□□ 0.32
SEMA3DO95025 RNF126P1-202ENST00000569893 925 ntBASIC17.05■□□□□ 0.32
SEMA3DO95025 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 Z83836.1-201ENST00000624605 1642 ntBASIC17.05■□□□□ 0.32
SEMA3DO95025 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms