Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 AC116407.2-201ENST00000613639 860 ntBASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 LINC01451-201ENST00000623792 534 ntBASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRIM49D1C9J1S8 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 TSPY14P-201ENST00000303979 915 ntBASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 MIR3917-201ENST00000580971 93 ntBASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 MIR4785-201ENST00000585005 73 ntBASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM49D1C9J1S8 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM49D1C9J1S8 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM49D1C9J1S8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 AC092865.7-201ENST00000641832 219 ntBASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms