Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 TERF1P1-201ENST00000311003 1181 ntBASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 STARP1-201ENST00000397973 869 ntBASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 AC117947.1-201ENST00000427448 529 ntBASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 KRT18P48-201ENST00000434763 852 ntBASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 YBX1P2-201ENST00000489612 999 ntBASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 AC112698.1-201ENST00000510299 916 ntBASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.09■□□□□ 0.49
TCRBV7S3A2A0A539 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TCRBV7S3A2A0A539 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 AC113347.1-201ENST00000413321 391 ntBASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 AC009154.2-201ENST00000621177 724 ntBASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 AC084018.2-201ENST00000613093 2607 ntBASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
TCRBV7S3A2A0A539 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 NKILA-202ENST00000614771 2598 ntBASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 TSPY12P-201ENST00000421279 868 ntBASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 AL031432.5-201ENST00000641059 760 ntBASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 AC097493.4-201ENST00000641197 219 ntBASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TCRBV7S3A2A0A539 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 AC011676.5-201ENST00000624864 2660 ntBASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.06■□□□□ 0.48
TCRBV7S3A2A0A539 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms