Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.32■■■□□ 2.12
PCDHA1Q9Y5I3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
PCDHA1Q9Y5I3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA1Q9Y5I3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA1Q9Y5I3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA1Q9Y5I3 AC093536.1-201ENST00000569153 554 ntBASIC28.31■■■□□ 2.12
PCDHA1Q9Y5I3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA1Q9Y5I3 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA1Q9Y5I3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA1Q9Y5I3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC28.3■■■□□ 2.12
PCDHA1Q9Y5I3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA1Q9Y5I3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
PCDHA1Q9Y5I3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA1Q9Y5I3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PCDHA1Q9Y5I3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PCDHA1Q9Y5I3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC28.29■■■□□ 2.12
PCDHA1Q9Y5I3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.29■■■□□ 2.12
PCDHA1Q9Y5I3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC28.28■■■□□ 2.12
PCDHA1Q9Y5I3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PCDHA1Q9Y5I3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PCDHA1Q9Y5I3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC28.27■■■□□ 2.12
PCDHA1Q9Y5I3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA1Q9Y5I3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA1Q9Y5I3 AC012354.3-201ENST00000623734 483 ntBASIC28.27■■■□□ 2.12
PCDHA1Q9Y5I3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA1Q9Y5I3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
PCDHA1Q9Y5I3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
PCDHA1Q9Y5I3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCDHA1Q9Y5I3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PCDHA1Q9Y5I3 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PCDHA1Q9Y5I3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC28.26■■■□□ 2.11
PCDHA1Q9Y5I3 RAP2CP1-202ENST00000605179 643 ntBASIC28.25■■■□□ 2.11
PCDHA1Q9Y5I3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCDHA1Q9Y5I3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.24■■■□□ 2.11
PCDHA1Q9Y5I3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC28.24■■■□□ 2.11
PCDHA1Q9Y5I3 AL592293.1-201ENST00000502889 1188 ntBASIC28.24■■■□□ 2.11
PCDHA1Q9Y5I3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC28.24■■■□□ 2.11
PCDHA1Q9Y5I3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCDHA1Q9Y5I3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC28.24■■■□□ 2.11
PCDHA1Q9Y5I3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC28.23■■■□□ 2.11
PCDHA1Q9Y5I3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA1Q9Y5I3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
PCDHA1Q9Y5I3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA1Q9Y5I3 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA1Q9Y5I3 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.22■■■□□ 2.11
PCDHA1Q9Y5I3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
PCDHA1Q9Y5I3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
PCDHA1Q9Y5I3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA1Q9Y5I3 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA1Q9Y5I3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA1Q9Y5I3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC28.2■■■□□ 2.1
PCDHA1Q9Y5I3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC28.19■■■□□ 2.1
PCDHA1Q9Y5I3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA1Q9Y5I3 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA1Q9Y5I3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA1Q9Y5I3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PCDHA1Q9Y5I3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA1Q9Y5I3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA1Q9Y5I3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA1Q9Y5I3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
PCDHA1Q9Y5I3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.18■■■□□ 2.1
PCDHA1Q9Y5I3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
PCDHA1Q9Y5I3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA1Q9Y5I3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA1Q9Y5I3 AL033527.3-201ENST00000566366 1196 ntBASIC28.17■■■□□ 2.1
PCDHA1Q9Y5I3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
PCDHA1Q9Y5I3 AC142472.1-201ENST00000612013 1741 ntBASIC28.17■■■□□ 2.1
PCDHA1Q9Y5I3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA1Q9Y5I3 AC004987.1-201ENST00000428627 508 ntBASIC28.16■■■□□ 2.1
PCDHA1Q9Y5I3 AC129492.7-201ENST00000622992 756 ntBASIC28.16■■■□□ 2.1
PCDHA1Q9Y5I3 AP004609.3-201ENST00000610705 1884 ntBASIC28.16■■■□□ 2.1
PCDHA1Q9Y5I3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
PCDHA1Q9Y5I3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCDHA1Q9Y5I3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
PCDHA1Q9Y5I3 ATP5G2P3-201ENST00000429083 425 ntBASIC28.14■■■□□ 2.1
PCDHA1Q9Y5I3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHA1Q9Y5I3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHA1Q9Y5I3 TSPY13P-201ENST00000338964 914 ntBASIC28.12■■■□□ 2.09
PCDHA1Q9Y5I3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.12■■■□□ 2.09
PCDHA1Q9Y5I3 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHA1Q9Y5I3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
PCDHA1Q9Y5I3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
PCDHA1Q9Y5I3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC28.1■■■□□ 2.09
PCDHA1Q9Y5I3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.1■■■□□ 2.09
PCDHA1Q9Y5I3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC28.1■■■□□ 2.09
PCDHA1Q9Y5I3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 249.6 ms