Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLRN3Q8NCR9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLRN3Q8NCR9 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CLRN3Q8NCR9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 SLC25A24-204ENST00000569674 2357 ntBASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.57■□□□□ 0.72
CLRN3Q8NCR9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.56■□□□□ 0.72
CLRN3Q8NCR9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN3Q8NCR9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN3Q8NCR9 AP004833.2-201ENST00000532228 1454 ntBASIC19.56■□□□□ 0.72
CLRN3Q8NCR9 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.56■□□□□ 0.72
CLRN3Q8NCR9 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CLRN3Q8NCR9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.56■□□□□ 0.72
CLRN3Q8NCR9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 AL139125.2-201ENST00000623134 1869 ntBASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN3Q8NCR9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLRN3Q8NCR9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN3Q8NCR9 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.53■□□□□ 0.72
CLRN3Q8NCR9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN3Q8NCR9 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CLRN3Q8NCR9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLRN3Q8NCR9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CLRN3Q8NCR9 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLRN3Q8NCR9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
CLRN3Q8NCR9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLRN3Q8NCR9 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CLRN3Q8NCR9 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLRN3Q8NCR9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLRN3Q8NCR9 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 AL121603.2-201ENST00000557373 2117 ntBASIC19.51■□□□□ 0.71
CLRN3Q8NCR9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.5■□□□□ 0.71
CLRN3Q8NCR9 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 AC142381.3-201ENST00000568208 1670 ntBASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
CLRN3Q8NCR9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN3Q8NCR9 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CLRN3Q8NCR9 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN3Q8NCR9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN3Q8NCR9 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN3Q8NCR9 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLRN3Q8NCR9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN3Q8NCR9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN3Q8NCR9 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN3Q8NCR9 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN3Q8NCR9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN3Q8NCR9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLRN3Q8NCR9 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLRN3Q8NCR9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms