Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SLC44A3Q8N4M1 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SLC44A3Q8N4M1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SLC44A3Q8N4M1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.52■■□□□ 1.68
SLC44A3Q8N4M1 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SLC44A3Q8N4M1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC25.52■■□□□ 1.68
SLC44A3Q8N4M1 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.51■■□□□ 1.67
SLC44A3Q8N4M1 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.51■■□□□ 1.67
SLC44A3Q8N4M1 AL356441.2-201ENST00000443009 864 ntBASIC25.51■■□□□ 1.67
SLC44A3Q8N4M1 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
SLC44A3Q8N4M1 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.51■■□□□ 1.67
SLC44A3Q8N4M1 ST7-207ENST00000393449 2127 ntTSL 5 BASIC25.51■■□□□ 1.67
SLC44A3Q8N4M1 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SLC44A3Q8N4M1 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SLC44A3Q8N4M1 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.5■■□□□ 1.67
SLC44A3Q8N4M1 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SLC44A3Q8N4M1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
SLC44A3Q8N4M1 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SLC44A3Q8N4M1 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
SLC44A3Q8N4M1 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC25.49■■□□□ 1.67
SLC44A3Q8N4M1 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
SLC44A3Q8N4M1 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
SLC44A3Q8N4M1 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.49■■□□□ 1.67
SLC44A3Q8N4M1 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SLC44A3Q8N4M1 AL359504.2-201ENST00000605506 1601 ntBASIC25.48■■□□□ 1.67
SLC44A3Q8N4M1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SLC44A3Q8N4M1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.48■■□□□ 1.67
SLC44A3Q8N4M1 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
SLC44A3Q8N4M1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC25.47■■□□□ 1.67
SLC44A3Q8N4M1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SLC44A3Q8N4M1 AP002414.2-202ENST00000590929 1450 ntBASIC25.47■■□□□ 1.67
SLC44A3Q8N4M1 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SLC44A3Q8N4M1 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SLC44A3Q8N4M1 ABCB10P3-201ENST00000561950 2166 ntBASIC25.46■■□□□ 1.67
SLC44A3Q8N4M1 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
SLC44A3Q8N4M1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
SLC44A3Q8N4M1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
SLC44A3Q8N4M1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
SLC44A3Q8N4M1 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.46■■□□□ 1.67
SLC44A3Q8N4M1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SLC44A3Q8N4M1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SLC44A3Q8N4M1 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.45■■□□□ 1.66
SLC44A3Q8N4M1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
SLC44A3Q8N4M1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
SLC44A3Q8N4M1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
SLC44A3Q8N4M1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 AC019171.1-201ENST00000601251 1056 ntBASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SLC44A3Q8N4M1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC25.43■■□□□ 1.66
SLC44A3Q8N4M1 AC239859.2-201ENST00000444165 318 ntBASIC25.43■■□□□ 1.66
SLC44A3Q8N4M1 RNF146-205ENST00000477776 762 ntTSL 3 BASIC25.43■■□□□ 1.66
SLC44A3Q8N4M1 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SLC44A3Q8N4M1 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SLC44A3Q8N4M1 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SLC44A3Q8N4M1 AL139393.2-201ENST00000608721 2025 ntBASIC25.41■■□□□ 1.66
SLC44A3Q8N4M1 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.41■■□□□ 1.66
SLC44A3Q8N4M1 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SLC44A3Q8N4M1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
SLC44A3Q8N4M1 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25.4■■□□□ 1.66
SLC44A3Q8N4M1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SLC44A3Q8N4M1 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.4■■□□□ 1.66
SLC44A3Q8N4M1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.39■■□□□ 1.66
SLC44A3Q8N4M1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.38■■□□□ 1.65
SLC44A3Q8N4M1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
SLC44A3Q8N4M1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
SLC44A3Q8N4M1 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.38■■□□□ 1.65
SLC44A3Q8N4M1 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 AC087393.1-201ENST00000582896 145 ntBASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SLC44A3Q8N4M1 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SLC44A3Q8N4M1 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SLC44A3Q8N4M1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 TK2-216ENST00000564917 1156 ntTSL 3 BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SLC44A3Q8N4M1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SLC44A3Q8N4M1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.34■■□□□ 1.65
SLC44A3Q8N4M1 Z92544.1-202ENST00000571933 1220 ntBASIC25.34■■□□□ 1.65
SLC44A3Q8N4M1 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.33■■□□□ 1.65
SLC44A3Q8N4M1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SLC44A3Q8N4M1 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.33■■□□□ 1.65
SLC44A3Q8N4M1 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.33■■□□□ 1.65
SLC44A3Q8N4M1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
SLC44A3Q8N4M1 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms