Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.49■□□□□ 0.87
CSPG4Q6UVK1 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CSPG4Q6UVK1 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CSPG4Q6UVK1 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CSPG4Q6UVK1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CSPG4Q6UVK1 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CSPG4Q6UVK1 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CSPG4Q6UVK1 Z92544.1-202ENST00000571933 1220 ntBASIC20.47■□□□□ 0.87
CSPG4Q6UVK1 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CSPG4Q6UVK1 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.46■□□□□ 0.87
CSPG4Q6UVK1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CSPG4Q6UVK1 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
CSPG4Q6UVK1 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CSPG4Q6UVK1 AC018755.3-202ENST00000596210 929 ntBASIC20.45■□□□□ 0.86
CSPG4Q6UVK1 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.45■□□□□ 0.86
CSPG4Q6UVK1 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CSPG4Q6UVK1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.44■□□□□ 0.86
CSPG4Q6UVK1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CSPG4Q6UVK1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.44■□□□□ 0.86
CSPG4Q6UVK1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CSPG4Q6UVK1 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CSPG4Q6UVK1 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.44■□□□□ 0.86
CSPG4Q6UVK1 AP004833.2-201ENST00000532228 1454 ntBASIC20.44■□□□□ 0.86
CSPG4Q6UVK1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 ABCB10P3-201ENST00000561950 2166 ntBASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 AC008406.3-201ENST00000620001 1374 ntBASIC20.43■□□□□ 0.86
CSPG4Q6UVK1 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 AL139393.2-201ENST00000608721 2025 ntBASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.42■□□□□ 0.86
CSPG4Q6UVK1 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.41■□□□□ 0.86
CSPG4Q6UVK1 ABCB10P1-201ENST00000614297 2181 ntBASIC20.41■□□□□ 0.86
CSPG4Q6UVK1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CSPG4Q6UVK1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CSPG4Q6UVK1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CSPG4Q6UVK1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.4■□□□□ 0.86
CSPG4Q6UVK1 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.4■□□□□ 0.86
CSPG4Q6UVK1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.39■□□□□ 0.86
CSPG4Q6UVK1 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.39■□□□□ 0.85
CSPG4Q6UVK1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSPG4Q6UVK1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.39■□□□□ 0.85
CSPG4Q6UVK1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CSPG4Q6UVK1 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 MIR3960-201ENST00000583311 91 ntBASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CSPG4Q6UVK1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSPG4Q6UVK1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.37■□□□□ 0.85
CSPG4Q6UVK1 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.37■□□□□ 0.85
CSPG4Q6UVK1 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSPG4Q6UVK1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSPG4Q6UVK1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.36■□□□□ 0.85
CSPG4Q6UVK1 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSPG4Q6UVK1 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.36■□□□□ 0.85
CSPG4Q6UVK1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSPG4Q6UVK1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSPG4Q6UVK1 MIR638-201ENST00000385237 100 ntBASIC20.35■□□□□ 0.85
CSPG4Q6UVK1 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.35■□□□□ 0.85
CSPG4Q6UVK1 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSPG4Q6UVK1 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CSPG4Q6UVK1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.34■□□□□ 0.85
CSPG4Q6UVK1 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSPG4Q6UVK1 KRT125P-201ENST00000546827 989 ntBASIC20.33■□□□□ 0.85
CSPG4Q6UVK1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CSPG4Q6UVK1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.33■□□□□ 0.84
CSPG4Q6UVK1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CSPG4Q6UVK1 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CSPG4Q6UVK1 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.32■□□□□ 0.84
CSPG4Q6UVK1 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.32■□□□□ 0.84
CSPG4Q6UVK1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CSPG4Q6UVK1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CSPG4Q6UVK1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.31■□□□□ 0.84
CSPG4Q6UVK1 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.31■□□□□ 0.84
CSPG4Q6UVK1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.31■□□□□ 0.84
CSPG4Q6UVK1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CSPG4Q6UVK1 AC019171.1-201ENST00000601251 1056 ntBASIC20.31■□□□□ 0.84
CSPG4Q6UVK1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms