Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC13.98□□□□□ -0.17
UBR4Q5T4S7 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC13.98□□□□□ -0.17
UBR4Q5T4S7 WHAMMP2-203ENST00000563942 1603 ntBASIC13.98□□□□□ -0.17
UBR4Q5T4S7 AL117332.1-201ENST00000622628 974 ntBASIC13.97□□□□□ -0.17
UBR4Q5T4S7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
UBR4Q5T4S7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
UBR4Q5T4S7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
UBR4Q5T4S7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
UBR4Q5T4S7 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
UBR4Q5T4S7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC13.96□□□□□ -0.18
UBR4Q5T4S7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
UBR4Q5T4S7 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
UBR4Q5T4S7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
UBR4Q5T4S7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
UBR4Q5T4S7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC13.94□□□□□ -0.18
UBR4Q5T4S7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC13.94□□□□□ -0.18
UBR4Q5T4S7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC13.94□□□□□ -0.18
UBR4Q5T4S7 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
UBR4Q5T4S7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC13.93□□□□□ -0.18
UBR4Q5T4S7 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
UBR4Q5T4S7 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UBR4Q5T4S7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
UBR4Q5T4S7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC13.93□□□□□ -0.18
UBR4Q5T4S7 IKBKGP1-201ENST00000612193 1073 ntBASIC13.93□□□□□ -0.18
UBR4Q5T4S7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
UBR4Q5T4S7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
UBR4Q5T4S7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 AC106739.1-201ENST00000617035 715 ntBASIC13.92□□□□□ -0.18
UBR4Q5T4S7 MTX2-204ENST00000443241 799 ntTSL 3 BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 AC022517.1-201ENST00000592429 346 ntBASIC13.92□□□□□ -0.18
UBR4Q5T4S7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
UBR4Q5T4S7 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC13.91□□□□□ -0.18
UBR4Q5T4S7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 HLA-L-209ENST00000420110 1011 ntBASIC13.9□□□□□ -0.18
UBR4Q5T4S7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBR4Q5T4S7 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 RASSF1-AS1-201ENST00000629828 790 ntBASIC13.89□□□□□ -0.19
UBR4Q5T4S7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC13.89□□□□□ -0.19
UBR4Q5T4S7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UBR4Q5T4S7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UBR4Q5T4S7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
UBR4Q5T4S7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UBR4Q5T4S7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC13.88□□□□□ -0.19
UBR4Q5T4S7 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC13.88□□□□□ -0.19
UBR4Q5T4S7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
UBR4Q5T4S7 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
UBR4Q5T4S7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
UBR4Q5T4S7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
UBR4Q5T4S7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC13.87□□□□□ -0.19
UBR4Q5T4S7 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UBR4Q5T4S7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
UBR4Q5T4S7 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC13.86□□□□□ -0.19
UBR4Q5T4S7 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC13.86□□□□□ -0.19
UBR4Q5T4S7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC13.86□□□□□ -0.19
UBR4Q5T4S7 AC093536.1-201ENST00000569153 554 ntBASIC13.86□□□□□ -0.19
UBR4Q5T4S7 TSPY9P-201ENST00000440215 945 ntBASIC13.86□□□□□ -0.19
UBR4Q5T4S7 TSPY11P-201ENST00000442607 1045 ntBASIC13.86□□□□□ -0.19
UBR4Q5T4S7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC13.86□□□□□ -0.19
UBR4Q5T4S7 PBX2P1-201ENST00000493219 1291 ntBASIC13.86□□□□□ -0.19
UBR4Q5T4S7 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC13.86□□□□□ -0.19
UBR4Q5T4S7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UBR4Q5T4S7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UBR4Q5T4S7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC13.85□□□□□ -0.19
UBR4Q5T4S7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UBR4Q5T4S7 MIR3621-201ENST00000580529 85 ntBASIC13.85□□□□□ -0.19
UBR4Q5T4S7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
UBR4Q5T4S7 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms