Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.42■■□□□ 1.82
SCN1AP35498 RAP2CP1-202ENST00000605179 643 ntBASIC26.42■■□□□ 1.82
SCN1AP35498 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SCN1AP35498 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SCN1AP35498 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
SCN1AP35498 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC26.41■■□□□ 1.82
SCN1AP35498 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SCN1AP35498 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SCN1AP35498 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SCN1AP35498 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SCN1AP35498 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SCN1AP35498 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
SCN1AP35498 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SCN1AP35498 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SCN1AP35498 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.4■■□□□ 1.82
SCN1AP35498 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.4■■□□□ 1.82
SCN1AP35498 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SCN1AP35498 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
SCN1AP35498 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
SCN1AP35498 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
SCN1AP35498 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SCN1AP35498 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
SCN1AP35498 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
SCN1AP35498 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SCN1AP35498 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
SCN1AP35498 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SCN1AP35498 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
SCN1AP35498 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
SCN1AP35498 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.38■■□□□ 1.81
SCN1AP35498 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
SCN1AP35498 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.37■■□□□ 1.81
SCN1AP35498 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SCN1AP35498 AC009831.1-201ENST00000580420 1582 ntBASIC26.37■■□□□ 1.81
SCN1AP35498 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SCN1AP35498 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
SCN1AP35498 AC133552.2-201ENST00000619106 1032 ntBASIC26.36■■□□□ 1.81
SCN1AP35498 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SCN1AP35498 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.35■■□□□ 1.81
SCN1AP35498 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
SCN1AP35498 AL592293.1-201ENST00000502889 1188 ntBASIC26.35■■□□□ 1.81
SCN1AP35498 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SCN1AP35498 HES4-204ENST00000484667 667 ntTSL 3 BASIC26.34■■□□□ 1.81
SCN1AP35498 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SCN1AP35498 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC26.34■■□□□ 1.81
SCN1AP35498 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.34■■□□□ 1.81
SCN1AP35498 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC26.34■■□□□ 1.81
SCN1AP35498 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCN1AP35498 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCN1AP35498 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.33■■□□□ 1.81
SCN1AP35498 AC012354.3-201ENST00000623734 483 ntBASIC26.33■■□□□ 1.81
SCN1AP35498 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.33■■□□□ 1.81
SCN1AP35498 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.8
SCN1AP35498 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.32■■□□□ 1.8
SCN1AP35498 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SCN1AP35498 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SCN1AP35498 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SCN1AP35498 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SCN1AP35498 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SCN1AP35498 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
SCN1AP35498 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SCN1AP35498 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCN1AP35498 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.3■■□□□ 1.8
SCN1AP35498 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN1AP35498 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN1AP35498 RP9P-202ENST00000450133 1212 ntBASIC26.3■■□□□ 1.8
SCN1AP35498 MIR3960-201ENST00000583311 91 ntBASIC26.3■■□□□ 1.8
SCN1AP35498 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
SCN1AP35498 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SCN1AP35498 AC142472.1-201ENST00000612013 1741 ntBASIC26.29■■□□□ 1.8
SCN1AP35498 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SCN1AP35498 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN1AP35498 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN1AP35498 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.29■■□□□ 1.8
SCN1AP35498 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN1AP35498 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN1AP35498 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN1AP35498 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCN1AP35498 AC026202.3-201ENST00000600805 1127 ntBASIC26.28■■□□□ 1.8
SCN1AP35498 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCN1AP35498 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCN1AP35498 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCN1AP35498 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
SCN1AP35498 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
SCN1AP35498 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SCN1AP35498 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCN1AP35498 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SCN1AP35498 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCN1AP35498 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCN1AP35498 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.26■■□□□ 1.79
SCN1AP35498 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
SCN1AP35498 PKM-203ENST00000389093 2279 ntTSL 5 BASIC26.25■■□□□ 1.79
SCN1AP35498 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCN1AP35498 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
SCN1AP35498 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
SCN1AP35498 AC129492.7-201ENST00000622992 756 ntBASIC26.25■■□□□ 1.79
SCN1AP35498 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCN1AP35498 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCN1AP35498 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.24■■□□□ 1.79
SCN1AP35498 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC26.24■■□□□ 1.79
SCN1AP35498 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms