Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 DUX4L28-201ENST00000623687 678 ntBASIC21.8■■□□□ 1.08
LIMS3P0CW19 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMS3P0CW19 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIMS3P0CW19 AC142381.3-201ENST00000568208 1670 ntBASIC21.79■■□□□ 1.08
LIMS3P0CW19 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
LIMS3P0CW19 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.79■■□□□ 1.08
LIMS3P0CW19 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMS3P0CW19 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.79■■□□□ 1.08
LIMS3P0CW19 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMS3P0CW19 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMS3P0CW19 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMS3P0CW19 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.78■■□□□ 1.08
LIMS3P0CW19 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMS3P0CW19 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMS3P0CW19 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMS3P0CW19 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMS3P0CW19 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMS3P0CW19 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMS3P0CW19 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMS3P0CW19 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LIMS3P0CW19 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMS3P0CW19 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMS3P0CW19 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMS3P0CW19 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LIMS3P0CW19 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMS3P0CW19 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMS3P0CW19 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.75■■□□□ 1.07
LIMS3P0CW19 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
LIMS3P0CW19 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMS3P0CW19 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIMS3P0CW19 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.74■■□□□ 1.07
LIMS3P0CW19 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIMS3P0CW19 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIMS3P0CW19 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIMS3P0CW19 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIMS3P0CW19 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIMS3P0CW19 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIMS3P0CW19 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
LIMS3P0CW19 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIMS3P0CW19 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIMS3P0CW19 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.72■■□□□ 1.07
LIMS3P0CW19 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.72■■□□□ 1.07
LIMS3P0CW19 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIMS3P0CW19 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIMS3P0CW19 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.72■■□□□ 1.07
LIMS3P0CW19 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIMS3P0CW19 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.72■■□□□ 1.07
LIMS3P0CW19 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIMS3P0CW19 AC022211.4-201ENST00000625094 2161 ntBASIC21.71■■□□□ 1.07
LIMS3P0CW19 AC138932.3-201ENST00000567634 1902 ntBASIC21.71■■□□□ 1.07
LIMS3P0CW19 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.71■■□□□ 1.07
LIMS3P0CW19 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIMS3P0CW19 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIMS3P0CW19 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIMS3P0CW19 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.07
LIMS3P0CW19 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMS3P0CW19 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LIMS3P0CW19 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMS3P0CW19 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMS3P0CW19 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMS3P0CW19 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMS3P0CW19 AL139125.2-201ENST00000623134 1869 ntBASIC21.69■■□□□ 1.06
LIMS3P0CW19 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMS3P0CW19 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMS3P0CW19 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMS3P0CW19 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMS3P0CW19 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
LIMS3P0CW19 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMS3P0CW19 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMS3P0CW19 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.67■■□□□ 1.06
LIMS3P0CW19 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMS3P0CW19 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.67■■□□□ 1.06
LIMS3P0CW19 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LIMS3P0CW19 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMS3P0CW19 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMS3P0CW19 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMS3P0CW19 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMS3P0CW19 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMS3P0CW19 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMS3P0CW19 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMS3P0CW19 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.65■■□□□ 1.06
LIMS3P0CW19 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMS3P0CW19 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMS3P0CW19 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
LIMS3P0CW19 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.65■■□□□ 1.06
LIMS3P0CW19 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMS3P0CW19 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.65■■□□□ 1.06
LIMS3P0CW19 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMS3P0CW19 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMS3P0CW19 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
LIMS3P0CW19 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
LIMS3P0CW19 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms