Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 DUX4L22-201ENST00000618238 1269 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L20-201ENST00000619712 1269 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L21-201ENST00000622058 1269 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L10-201ENST00000622460 1267 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L25-201ENST00000624915 1269 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV3A0A0B4J244 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TRAV3A0A0B4J244 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.71■□□□□ 0.75
TRAV3A0A0B4J244 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.71■□□□□ 0.75
TRAV3A0A0B4J244 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV3A0A0B4J244 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV3A0A0B4J244 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.71■□□□□ 0.75
TRAV3A0A0B4J244 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV3A0A0B4J244 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV3A0A0B4J244 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV3A0A0B4J244 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV3A0A0B4J244 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRAV3A0A0B4J244 ERN1-208ENST00000606895 2068 ntBASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 DUX4L11-201ENST00000611504 1267 ntBASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 DUX4L12-201ENST00000614593 1267 ntBASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 DUX4L14-201ENST00000621227 1267 ntBASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRAV3A0A0B4J244 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRAV3A0A0B4J244 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAV3A0A0B4J244 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.67■□□□□ 0.74
TRAV3A0A0B4J244 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV3A0A0B4J244 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV3A0A0B4J244 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV3A0A0B4J244 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV3A0A0B4J244 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 MIR219A2-201ENST00000608502 1504 ntBASIC19.66■□□□□ 0.74
TRAV3A0A0B4J244 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV3A0A0B4J244 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV3A0A0B4J244 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.65■□□□□ 0.74
TRAV3A0A0B4J244 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV3A0A0B4J244 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV3A0A0B4J244 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV3A0A0B4J244 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRAV3A0A0B4J244 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV3A0A0B4J244 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
TRAV3A0A0B4J244 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV3A0A0B4J244 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV3A0A0B4J244 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV3A0A0B4J244 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV3A0A0B4J244 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV3A0A0B4J244 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV3A0A0B4J244 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TRAV3A0A0B4J244 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV3A0A0B4J244 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV3A0A0B4J244 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
TRAV3A0A0B4J244 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 HLA-V-202ENST00000446817 847 ntBASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 AC008813.1-201ENST00000536597 885 ntBASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV3A0A0B4J244 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRAV3A0A0B4J244 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.61■□□□□ 0.73
TRAV3A0A0B4J244 ZNRF2P2-203ENST00000454624 420 ntBASIC19.61■□□□□ 0.73
TRAV3A0A0B4J244 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.61■□□□□ 0.73
TRAV3A0A0B4J244 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.61■□□□□ 0.73
TRAV3A0A0B4J244 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV3A0A0B4J244 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 AC148477.6-201ENST00000623746 465 ntBASIC19.6■□□□□ 0.73
TRAV3A0A0B4J244 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 158.2 ms