Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 KRT16P1-201ENST00000399124 1418 ntBASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 AL163051.1-201ENST00000569214 1512 ntBASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 PCDHA14-201ENST00000506751 2298 ntBASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 MIR149-201ENST00000384879 89 ntBASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 AC133681.1-201ENST00000465482 601 ntBASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 AC026366.1-201ENST00000488803 879 ntBASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 AC068418.2-201ENST00000577309 3703 ntBASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USH1CQ9Y6N9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 AL391005.1-201ENST00000623953 2435 ntBASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 AL031985.4-201ENST00000642138 673 ntBASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.77■□□□□ 0.44
USH1CQ9Y6N9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
USH1CQ9Y6N9 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 AC011506.1-201ENST00000474329 610 ntBASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 AC092666.2-201ENST00000613287 246 ntBASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 CR392000.1-201ENST00000624770 1228 ntBASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms