Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 AL121672.3-201ENST00000608644 468 ntBASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 IGHV3-41-201ENST00000613121 348 ntBASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP4E1Q9UPM8 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 AC016734.2-201ENST00000624325 1377 ntBASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 AL355312.1-201ENST00000407115 2176 ntBASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
AP4E1Q9UPM8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 ARMC10P1-201ENST00000313754 855 ntBASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 CHCHD2P8-201ENST00000429873 447 ntBASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 AP000550.4-202ENST00000639755 178 ntBASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
AP4E1Q9UPM8 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms