Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
MKS1Q9NXB0 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.58■□□□□ 0.41
MKS1Q9NXB0 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
MKS1Q9NXB0 HCG11-201ENST00000411553 5696 ntBASIC17.58■□□□□ 0.4
MKS1Q9NXB0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 AL390955.1-201ENST00000428694 934 ntBASIC17.57■□□□□ 0.4
MKS1Q9NXB0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 AL512604.3-201ENST00000569583 964 ntBASIC17.57■□□□□ 0.4
MKS1Q9NXB0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 AL157888.1-201ENST00000631930 593 ntBASIC17.57■□□□□ 0.4
MKS1Q9NXB0 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 AC105020.1-201ENST00000435356 2205 ntBASIC17.57■□□□□ 0.4
MKS1Q9NXB0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MKS1Q9NXB0 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms