Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 CYP2D8P-201ENST00000433633 1490 ntBASIC13.37□□□□□ -0.27
LINC00477Q96M19 AC139713.2-201ENST00000641328 2723 ntBASIC13.37□□□□□ -0.27
LINC00477Q96M19 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 Telomerase-vert.1-201ENST00000363312 438 ntBASIC13.37□□□□□ -0.27
LINC00477Q96M19 AC034232.1-201ENST00000506026 1064 ntBASIC13.37□□□□□ -0.27
LINC00477Q96M19 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 CLN6-221ENST00000637494 765 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 LINC00167-201ENST00000530583 1419 ntBASIC13.37□□□□□ -0.27
LINC00477Q96M19 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
LINC00477Q96M19 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC13.37□□□□□ -0.27
LINC00477Q96M19 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC141586.5-201ENST00000624546 2050 ntBASIC13.36□□□□□ -0.27
LINC00477Q96M19 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 KRT89P-201ENST00000620027 1478 ntBASIC13.36□□□□□ -0.27
LINC00477Q96M19 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 HLA-J-201ENST00000462773 1622 ntBASIC13.36□□□□□ -0.27
LINC00477Q96M19 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 LINC00602-201ENST00000629776 2065 ntBASIC13.36□□□□□ -0.27
LINC00477Q96M19 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC100803.2-201ENST00000562459 1963 ntBASIC13.36□□□□□ -0.27
LINC00477Q96M19 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00477Q96M19 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00477Q96M19 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms