Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.23■□□□□ 0.83
ERCC4Q92889 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.23■□□□□ 0.83
ERCC4Q92889 LINC00167-201ENST00000530583 1419 ntBASIC20.23■□□□□ 0.83
ERCC4Q92889 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.23■□□□□ 0.83
ERCC4Q92889 MIR3180-4-201ENST00000582223 153 ntBASIC20.23■□□□□ 0.83
ERCC4Q92889 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.23■□□□□ 0.83
ERCC4Q92889 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.23■□□□□ 0.83
ERCC4Q92889 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.23■□□□□ 0.83
ERCC4Q92889 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.23■□□□□ 0.83
ERCC4Q92889 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.23■□□□□ 0.83
ERCC4Q92889 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.23■□□□□ 0.83
ERCC4Q92889 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 LINC00602-201ENST00000629776 2065 ntBASIC20.23■□□□□ 0.83
ERCC4Q92889 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
ERCC4Q92889 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
ERCC4Q92889 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.23■□□□□ 0.83
ERCC4Q92889 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
ERCC4Q92889 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.22■□□□□ 0.83
ERCC4Q92889 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.22■□□□□ 0.83
ERCC4Q92889 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.22■□□□□ 0.83
ERCC4Q92889 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.22■□□□□ 0.83
ERCC4Q92889 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.22■□□□□ 0.83
ERCC4Q92889 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.22■□□□□ 0.83
ERCC4Q92889 MIR4497-201ENST00000583208 89 ntBASIC20.22■□□□□ 0.83
ERCC4Q92889 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.22■□□□□ 0.83
ERCC4Q92889 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.22■□□□□ 0.83
ERCC4Q92889 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
ERCC4Q92889 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ERCC4Q92889 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.21■□□□□ 0.83
ERCC4Q92889 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.21■□□□□ 0.83
ERCC4Q92889 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
ERCC4Q92889 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.21■□□□□ 0.83
ERCC4Q92889 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.21■□□□□ 0.83
ERCC4Q92889 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
ERCC4Q92889 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.21■□□□□ 0.83
ERCC4Q92889 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.21■□□□□ 0.83
ERCC4Q92889 AL157888.1-201ENST00000631930 593 ntBASIC20.21■□□□□ 0.83
ERCC4Q92889 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
ERCC4Q92889 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
ERCC4Q92889 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 KRT17P2-201ENST00000300992 1314 ntBASIC20.21■□□□□ 0.83
ERCC4Q92889 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
ERCC4Q92889 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
ERCC4Q92889 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.21■□□□□ 0.83
ERCC4Q92889 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ERCC4Q92889 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
ERCC4Q92889 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.2■□□□□ 0.82
ERCC4Q92889 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
ERCC4Q92889 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.2■□□□□ 0.82
ERCC4Q92889 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.2■□□□□ 0.82
ERCC4Q92889 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms